RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 FAM222AQ5U5X8 452 aa14.31□□□□□ -0.12
CLN3-250ENST00000636839 LINC00469Q8N7U9 141 aa14.31□□□□□ -0.12
CLN3-250ENST00000636839 IGLV2-18A0A075B6J9 118 aa14.3□□□□□ -0.12
CLN3-250ENST00000636839 MRAPQ8TCY5 172 aa14.3□□□□□ -0.12
CLN3-250ENST00000636839 TENM3Q9P273 2699 aa14.29□□□□□ -0.12
CLN3-250ENST00000636839 HSBP1O75506 76 aa14.29□□□□□ -0.12
CLN3-250ENST00000636839 SUMO2P61956 95 aaKnown RBP14.29□□□□□ -0.12
CLN3-250ENST00000636839 FA2HQ7L5A8 372 aa14.29□□□□□ -0.12
CLN3-250ENST00000636839 CELA1Q9UNI1 258 aa14.29□□□□□ -0.12
CLN3-250ENST00000636839 AMTP48728 403 aa14.29□□□□□ -0.12
CLN3-250ENST00000636839 TRAV4A0A0B4J268 109 aa14.28□□□□□ -0.12
CLN3-250ENST00000636839 TCAPO15273 167 aa14.28□□□□□ -0.12
CLN3-250ENST00000636839 MIFP14174 115 aa14.28□□□□□ -0.12
CLN3-250ENST00000636839 OR10D4PQ8NGN7 298 aa14.28□□□□□ -0.12
CLN3-250ENST00000636839 AP5S1Q9NUS5 200 aa14.28□□□□□ -0.12
CLN3-250ENST00000636839 IGHV1-24A0A0C4DH33 117 aa14.27□□□□□ -0.12
CLN3-250ENST00000636839 CHCHD1Q96BP2 118 aaKnown RBP14.27□□□□□ -0.12
CLN3-250ENST00000636839 NDUFAF3Q9BU61 184 aa14.27□□□□□ -0.12
CLN3-250ENST00000636839 PACRGQ96M98 296 aaPredicted RBP14.27□□□□□ -0.13
CLN3-250ENST00000636839 DKK2Q9UBU2 259 aa14.27□□□□□ -0.13
CLN3-250ENST00000636839 PRSS47A8MTI9 375 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 RHODO00212 210 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 ZFP2Q6ZN57 461 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 LINC00612Q8N6U2 182 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 Q8N8P6 123 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 SMIM2Q9BVW6 85 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 ST20Q9HBF5 79 aa14.26□□□□□ -0.13
CLN3-250ENST00000636839 TMEM18Q96B42 140 aa14.25□□□□□ -0.13
CLN3-250ENST00000636839 C20orf78Q9BR46 151 aa14.25□□□□□ -0.13
CLN3-250ENST00000636839 NIT2Q9NQR4 276 aa14.25□□□□□ -0.13
CLN3-250ENST00000636839 A0A096LNJ9 63 aa14.25□□□□□ -0.13
CLN3-250ENST00000636839 TMEM70Q9BUB7 260 aa14.25□□□□□ -0.13
CLN3-250ENST00000636839 SDHAF1A6NFY7 115 aa14.24□□□□□ -0.13
CLN3-250ENST00000636839 LINC00173Q6ZV60 143 aa14.24□□□□□ -0.13
CLN3-250ENST00000636839 POLR2KP53803 58 aaKnown RBP14.24□□□□□ -0.13
CLN3-250ENST00000636839 SLC25A29Q8N8R3 303 aa14.24□□□□□ -0.13
CLN3-250ENST00000636839 NXT2Q9NPJ8 142 aaKnown RBP14.24□□□□□ -0.13
CLN3-250ENST00000636839 TP53TG1Q9Y2A0 90 aa14.24□□□□□ -0.13
CLN3-250ENST00000636839 FHL2Q14192 279 aa14.23□□□□□ -0.13
CLN3-250ENST00000636839 NEXN-AS1Q8NBZ9 246 aa14.23□□□□□ -0.13
CLN3-250ENST00000636839 TRBV6-5A0A0K0K1A5 114 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 PPP1R17O96001 155 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 SMIM6P0DI80 62 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 LINC01546A6NGU7 62 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 LYRM9A8MSI8 78 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 EDA2RQ9HAV5 297 aa14.22□□□□□ -0.13
CLN3-250ENST00000636839 LOC100131303A0A0U1RQF7 123 aa14.21□□□□□ -0.13
CLN3-250ENST00000636839 TRGV4A0A0C4DH28 118 aa14.2□□□□□ -0.14
CLN3-250ENST00000636839 H7C1H1 209 aa14.2□□□□□ -0.14
CLN3-250ENST00000636839 KRTAP21-3Q3LHN1 58 aa14.2□□□□□ -0.14
CLN3-250ENST00000636839 TNFRSF18Q9Y5U5 241 aa14.19□□□□□ -0.14
CLN3-250ENST00000636839 IGHV3-38A0A0C4DH36 116 aa14.19□□□□□ -0.14
CLN3-250ENST00000636839 TRBV27A0A0K0K1C4 114 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 K7EQD1 137 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 VCYO14598 125 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 SPART-AS1P0CW21 52 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 DAD1P61803 113 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 LAGE3Q14657 143 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 ZNRF2Q8NHG8 242 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 PHLDA1Q8WV24 401 aaPredicted RBP14.18□□□□□ -0.14
CLN3-250ENST00000636839 C18orf15Q96N68 181 aa14.18□□□□□ -0.14
CLN3-250ENST00000636839 A0A0J9YWU9 116 aa14.17□□□□□ -0.14
CLN3-250ENST00000636839 TM2D3Q9BRN9 247 aa14.17□□□□□ -0.14
CLN3-250ENST00000636839 GAGE12JA6NER3 117 aa14.16□□□□□ -0.14
CLN3-250ENST00000636839 BTF3P20290 206 aaKnown RBP14.16□□□□□ -0.14
CLN3-250ENST00000636839 RPL32P62910 135 aaKnown RBP14.16□□□□□ -0.14
CLN3-250ENST00000636839 GAGE1Q13065 139 aa14.16□□□□□ -0.14
CLN3-250ENST00000636839 GAGE4Q13068 117 aa14.16□□□□□ -0.14
CLN3-250ENST00000636839 GAGE5Q13069 117 aa14.16□□□□□ -0.14
CLN3-250ENST00000636839 GAGE13Q4V321 117 aa14.16□□□□□ -0.14
CLN3-250ENST00000636839 LEPROTL1O95214 131 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 TSHBP01222 138 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 FCER1GP30273 86 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 KRTDAPP60985 99 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 PYY3Q5JQD4 70 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 HHLA3Q9XRX5 114 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 NUDT3O95989 172 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 HBDP02042 147 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 C12orf74Q32Q52 190 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 CDPF1Q6NVV7 123 aa14.15□□□□□ -0.14
CLN3-250ENST00000636839 HUWE1Q7Z6Z7 4374 aaKnown RBP14.15□□□□□ -0.14
CLN3-250ENST00000636839 I3L3M4 83 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 C3orf79P0CE67 100 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 TRBV7-3A0A075B6L6 115 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 TRBV6-4A0A1B0GX49 114 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 HTN3P15516 51 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 KIR2DL4Q99706 377 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 SPATA25Q9BR10 227 aa14.14□□□□□ -0.15
CLN3-250ENST00000636839 SPATA12Q7Z6I5 190 aa14.13□□□□□ -0.15
CLN3-250ENST00000636839 DNAJC30Q96LL9 226 aa14.12□□□□□ -0.15
CLN3-250ENST00000636839 A0A0J9YY99 117 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 TRBV10-1A0A0K0K1A3 114 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 CIDEAO60543 219 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 CRYBA4P53673 196 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 RPL39P62891 51 aaKnown RBP14.11□□□□□ -0.15
CLN3-250ENST00000636839 ORMDL2Q53FV1 153 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 COL7A1Q02388 2944 aa14.11□□□□□ -0.15
CLN3-250ENST00000636839 H0Y8G0 127 aa14.1□□□□□ -0.15
CLN3-250ENST00000636839 RPL36AP83881 106 aaKnown RBP14.1□□□□□ -0.15
CLN3-250ENST00000636839 RPL36ALQ969Q0 106 aaKnown RBP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms