RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MRPL53Q96EL3 112 aaKnown RBP8.36□□□□□ -1.07
CLN3-244ENST00000636147 HIVEP3Q5T1R4 2406 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 IGLV2-18A0A075B6J9 118 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 CDIP1Q9H305 208 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 FN1P02751 2386 aaKnown RBP8.36□□□□□ -1.07
CLN3-244ENST00000636147 PRIMA1Q86XR5 153 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 MDFICQ9P1T7 246 aa8.36□□□□□ -1.07
CLN3-244ENST00000636147 NDUFA4O00483 81 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 LEPROTO15243 131 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 IGHV3-53P01767 116 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 PIP4P1Q86T03 277 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 ABCA2Q9BZC7 2435 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 TNFRSF13BO14836 293 aaPredicted RBP8.35□□□□□ -1.07
CLN3-244ENST00000636147 ZFAND2AQ8N6M9 145 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 DMXL2Q8TDJ6 3036 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.35□□□□□ -1.07
CLN3-244ENST00000636147 IGHV1OR15-1A0A075B7D0 117 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 IGKV2-29A2NJV5 120 aaPredicted RBP8.35□□□□□ -1.07
CLN3-244ENST00000636147 CCDC179H3BU77 68 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 SMCPP49901 116 aaPredicted RBP8.35□□□□□ -1.07
CLN3-244ENST00000636147 BLCAPP62952 87 aa8.35□□□□□ -1.07
CLN3-244ENST00000636147 UBE2L6O14933 153 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 IGHV3-33P01772 117 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 IGHV3-30P01768 117 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 IGHV3-30-5P0DP03 117 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 ICOSQ9Y6W8 199 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 TRGV11A0A075B6L2 103 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 UBE2D1P51668 147 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 SHISA2Q6UWI4 295 aa8.34□□□□□ -1.07
CLN3-244ENST00000636147 FAM236AA0A1B0GUQ0 79 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 FAM236BA0A1B0GV22 79 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 USMG5Q96IX5 58 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 TIMM17AQ99595 171 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 PRO0461Q9UI25 63 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 RHODO00212 210 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 CHCHD5Q9BSY4 110 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 LOC400499M0QZD8 3231 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 POLQO75417 2590 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 TRBV10-2A0A0K0K1G8 114 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 A8MZ25 164 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 TSPEAR-AS2P59090 65 aa8.33□□□□□ -1.08
CLN3-244ENST00000636147 P0DMU3 169 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 FAM231AP0DMU4 169 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 FAM231CP0DMU5 169 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 IGHV3-30-3P0DP02 117 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 ZNRF2Q8NHG8 242 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 NAV2Q8IVL1 2488 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 DEFB131AP59861 70 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 AJUBAQ96IF1 538 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 CITED1Q99966 193 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 PIMREGQ9BSJ6 248 aa8.32□□□□□ -1.08
CLN3-244ENST00000636147 PRRC2AP48634 2157 aaKnown RBP8.32□□□□□ -1.08
CLN3-244ENST00000636147 ODF3BA8MYP8 253 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 TRIAP1O43715 76 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 A0A0J9YXY3 114 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 CLPSL1A2RUU4 121 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 RNASE3P12724 160 aaKnown RBP8.31□□□□□ -1.08
CLN3-244ENST00000636147 HOXD3P31249 432 aaPredicted RBP8.31□□□□□ -1.08
CLN3-244ENST00000636147 Q8NA96 180 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 C11orf68Q9H3H3 251 aaKnown RBP8.31□□□□□ -1.08
CLN3-244ENST00000636147 LINC00158P58513 81 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 COPS9Q8WXC6 57 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 UBE2E2Q96LR5 201 aa8.31□□□□□ -1.08
CLN3-244ENST00000636147 C5orf56Q8N8D9 126 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 C11orf44Q8N8P7 122 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 UBE2D3P61077 147 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 UBE2D2P62837 147 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 RHOHQ15669 191 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 C20orf203Q8NBC4 194 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 Q9H8V8 135 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 ZNF580Q9UK33 172 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 CRLF1O75462 422 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 ZNF22P17026 224 aaPredicted RBP8.3□□□□□ -1.08
CLN3-244ENST00000636147 HIST1H4AP62805 103 aaKnown RBP8.3□□□□□ -1.08
CLN3-244ENST00000636147 JMJD1CQ15652 2540 aa8.3□□□□□ -1.08
CLN3-244ENST00000636147 IGHV1-69P01742 117 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 Q6ZSV7 163 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 COX8CQ7Z4L0 72 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 PKD1L2Q7Z442 2459 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 DCHS1Q96JQ0 3298 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 TRGV1A0A0A0MS02 117 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 LY6DQ14210 128 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 MRPL23Q16540 153 aaKnown RBP8.29□□□□□ -1.08
CLN3-244ENST00000636147 HIVEP2P31629 2446 aa8.29□□□□□ -1.08
CLN3-244ENST00000636147 CRPP02741 224 aa8.28□□□□□ -1.08
CLN3-244ENST00000636147 LINC01619G3V211 115 aa8.28□□□□□ -1.08
CLN3-244ENST00000636147 LGALS9O00182 355 aa8.28□□□□□ -1.08
CLN3-244ENST00000636147 IGLV4-69A0A075B6H9 119 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 PAX4O43316 350 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 BAALC-AS2P0C853 105 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 EPG5Q9HCE0 2579 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 IGHV4-4A0A075B6R2 117 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 CCL19Q99731 98 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 SIRPDQ9H106 197 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 XCL2Q9UBD3 114 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 IGIPA6NJ69 53 aa8.27□□□□□ -1.09
CLN3-244ENST00000636147 A0A0B4J2C4 111 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 TMEM223A0PJW6 202 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 CRYGDP07320 174 aa8.26□□□□□ -1.09
CLN3-244ENST00000636147 IGHV4-38-2P0DP08 117 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 105.6 ms