RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 TWIST1Q15672 202 aa13.19□□□□□ -0.3
SHKBP1-221ENST00000599833 LINC01556Q5JQF7 62 aa13.19□□□□□ -0.3
SHKBP1-221ENST00000599833 Q8N3U1 123 aa13.19□□□□□ -0.3
SHKBP1-221ENST00000599833 SMIM17P0DL12 118 aa13.18□□□□□ -0.3
SHKBP1-221ENST00000599833 RPL36AP83881 106 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-221ENST00000599833 RPL36ALQ969Q0 106 aaKnown RBP13.18□□□□□ -0.3
SHKBP1-221ENST00000599833 TNFRSF18Q9Y5U5 241 aa13.18□□□□□ -0.3
SHKBP1-221ENST00000599833 IGHV3-38A0A0C4DH36 116 aa13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 PRSS29PA6NIE9 313 aa13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 F5H697 171 aa13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 MGPP08493 103 aa13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 BTF3P20290 206 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 NUP35Q8NFH5 326 aa13.17□□□□□ -0.3
SHKBP1-221ENST00000599833 KIAA1109Q2LD37 5005 aa13.16□□□□□ -0.3
SHKBP1-221ENST00000599833 SMIM27A0A1W2PRY6 76 aa13.16□□□□□ -0.3
SHKBP1-221ENST00000599833 ADCYAP1P18509 176 aa13.16□□□□□ -0.3
SHKBP1-221ENST00000599833 TNP2Q05952 138 aa13.16□□□□□ -0.3
SHKBP1-221ENST00000599833 C15orf54Q8N8G6 183 aa13.16□□□□□ -0.3
SHKBP1-221ENST00000599833 HERC2O95714 4834 aa13.15□□□□□ -0.3
SHKBP1-221ENST00000599833 RYR1P21817 5038 aa13.15□□□□□ -0.3
SHKBP1-221ENST00000599833 OR10J3Q5JRS4 329 aa13.15□□□□□ -0.3
SHKBP1-221ENST00000599833 NTM-AS1Q6ZSK4 140 aa13.15□□□□□ -0.3
SHKBP1-221ENST00000599833 APOBP04114 4563 aaKnown RBP13.14□□□□□ -0.31
SHKBP1-221ENST00000599833 TRAV8-6A0A0B4J262 113 aa13.14□□□□□ -0.31
SHKBP1-221ENST00000599833 A0A1B0GUT8 65 aa13.14□□□□□ -0.31
SHKBP1-221ENST00000599833 K7EP13 123 aa13.14□□□□□ -0.31
SHKBP1-221ENST00000599833 GATD1Q8NB37 220 aa13.14□□□□□ -0.31
SHKBP1-221ENST00000599833 A0A087WWC5 75 aa13.13□□□□□ -0.31
SHKBP1-221ENST00000599833 TRAV26-2A0A0B4J265 109 aa13.13□□□□□ -0.31
SHKBP1-221ENST00000599833 RASL11AQ6T310 242 aa13.13□□□□□ -0.31
SHKBP1-221ENST00000599833 RNF185Q96GF1 192 aa13.13□□□□□ -0.31
SHKBP1-221ENST00000599833 DNAJC30Q96LL9 226 aa13.13□□□□□ -0.31
SHKBP1-221ENST00000599833 GAS8-AS1O95177 125 aa13.12□□□□□ -0.31
SHKBP1-221ENST00000599833 NIT1Q86X76 327 aa13.12□□□□□ -0.31
SHKBP1-221ENST00000599833 TRBV6-8A0A0A6YYG3 113 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 IBA57-AS1B1ANH7 110 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 UQCC3Q6UW78 93 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 TMEM191AQ9H0A3 160 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 NIT2Q9NQR4 276 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 NAT8BQ9UHF3 227 aa13.11□□□□□ -0.31
SHKBP1-221ENST00000599833 IGHV3-30P01768 117 aa13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 IGHV3-33P01772 117 aa13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 IGHV3-30-3P0DP02 117 aa13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 IGHV3-30-5P0DP03 117 aa13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 DAZ4Q86SG3 579 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 DAZ3Q9NR90 486 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 DNAH8Q96JB1 4490 aa13.1□□□□□ -0.31
SHKBP1-221ENST00000599833 TRAV9-2A0A087WT02 112 aa13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 TMEM218A2RU14 115 aa13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 LINC00862A6NCI5 91 aa13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 H7C1H1 209 aa13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 PNRC1Q12796 327 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 RPL39LQ96EH5 51 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 HSPG2P98160 4391 aa13.09□□□□□ -0.31
SHKBP1-221ENST00000599833 RAB4AP20338 218 aa13.08□□□□□ -0.32
SHKBP1-221ENST00000599833 C10orf126Q8N4M7 172 aa13.08□□□□□ -0.32
SHKBP1-221ENST00000599833 FRZBQ92765 325 aa13.08□□□□□ -0.32
SHKBP1-221ENST00000599833 A0A1B0GXF2 115 aa13.07□□□□□ -0.32
SHKBP1-221ENST00000599833 RIGQ13278 110 aa13.06□□□□□ -0.32
SHKBP1-221ENST00000599833 IQCJQ1A5X6 159 aa13.06□□□□□ -0.32
SHKBP1-221ENST00000599833 COMMD7Q86VX2 200 aa13.06□□□□□ -0.32
SHKBP1-221ENST00000599833 AMN1Q8IY45 258 aa13.06□□□□□ -0.32
SHKBP1-221ENST00000599833 BORCS7Q96B45 105 aa13.06□□□□□ -0.32
SHKBP1-221ENST00000599833 RPS10P46783 165 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-221ENST00000599833 LAGE3Q14657 143 aa13.05□□□□□ -0.32
SHKBP1-221ENST00000599833 SMIM15Q7Z3B0 74 aa13.05□□□□□ -0.32
SHKBP1-221ENST00000599833 TRBV6-5A0A0K0K1A5 114 aa13.04□□□□□ -0.32
SHKBP1-221ENST00000599833 NFE4Q86UQ8 179 aa13.04□□□□□ -0.32
SHKBP1-221ENST00000599833 CHCHD7Q9BUK0 85 aa13.04□□□□□ -0.32
SHKBP1-221ENST00000599833 PPP1R2P9O14990 202 aa13.03□□□□□ -0.32
SHKBP1-221ENST00000599833 MPV17L2Q567V2 206 aa13.03□□□□□ -0.32
SHKBP1-221ENST00000599833 TMEM97Q5BJF2 176 aa13.03□□□□□ -0.32
SHKBP1-221ENST00000599833 C10orf91Q5T1B1 145 aa13.03□□□□□ -0.32
SHKBP1-221ENST00000599833 FAM104BQ5XKR9 115 aa13.02□□□□□ -0.33
SHKBP1-221ENST00000599833 DEFB104AQ8WTQ1 72 aa13.02□□□□□ -0.33
SHKBP1-221ENST00000599833 ANAPC16Q96DE5 110 aa13.02□□□□□ -0.33
SHKBP1-221ENST00000599833 SEC11CQ9BY50 192 aa13.02□□□□□ -0.33
SHKBP1-221ENST00000599833 MRPL54Q6P161 138 aaKnown RBP13.01□□□□□ -0.33
SHKBP1-221ENST00000599833 NRACQ8N912 160 aa13.01□□□□□ -0.33
SHKBP1-221ENST00000599833 MRAP2Q96G30 205 aa13.01□□□□□ -0.33
SHKBP1-221ENST00000599833 IGHV1-24A0A0C4DH33 117 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 LRCOL1A6NCL2 159 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 F8W036 122 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 SMKR1H3BMG3 65 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 CAMPP49913 170 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 KRTAP10-2P60368 255 aa13□□□□□ -0.33
SHKBP1-221ENST00000599833 MRPL51Q4U2R6 128 aaKnown RBP13□□□□□ -0.33
SHKBP1-221ENST00000599833 TRBV25-1A0A075B6N4 114 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 A0A1B0GW15 77 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 SDHAF1A6NFY7 115 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 NCR2O95944 276 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 MT-ND4LP03901 98 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 POLR2KP53803 58 aaKnown RBP12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 ATRAIDQ6UW56 229 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 Q9HAA7 133 aa12.99□□□□□ -0.33
SHKBP1-221ENST00000599833 A0A087WTM6 91 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 HBBP68871 147 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 ENHOQ6UWT2 76 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 MAPKAPK5-AS1Q8N8E1 139 aa12.98□□□□□ -0.33
SHKBP1-221ENST00000599833 Q8N976 141 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms