RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 C10orf126Q8N4M7 172 aa10.22□□□□□ -0.77
UPF1-202ENST00000594243 NEXN-AS1Q8NBZ9 246 aa10.22□□□□□ -0.77
UPF1-202ENST00000594243 PGLYRP4Q96LB8 373 aa10.22□□□□□ -0.77
UPF1-202ENST00000594243 LINC01556Q5JQF7 62 aa10.21□□□□□ -0.77
UPF1-202ENST00000594243 DNAJC30Q96LL9 226 aa10.21□□□□□ -0.77
UPF1-202ENST00000594243 HIGD1CA8MV81 97 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 M0QY20 66 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 IFITM2Q01629 132 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 NFE4Q86UQ8 179 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 TNFRSF18Q9Y5U5 241 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 V9GYV3 84 aa10.2□□□□□ -0.78
UPF1-202ENST00000594243 TMEM97Q5BJF2 176 aa10.19□□□□□ -0.78
UPF1-202ENST00000594243 SUMO4Q6EEV6 95 aa10.19□□□□□ -0.78
UPF1-202ENST00000594243 DAZ4Q86SG3 579 aaKnown RBP10.19□□□□□ -0.78
UPF1-202ENST00000594243 DAZ3Q9NR90 486 aaKnown RBP10.19□□□□□ -0.78
UPF1-202ENST00000594243 A0A1B0GUT8 65 aa10.18□□□□□ -0.78
UPF1-202ENST00000594243 RASL11AQ6T310 242 aa10.18□□□□□ -0.78
UPF1-202ENST00000594243 NIT2Q9NQR4 276 aa10.18□□□□□ -0.78
UPF1-202ENST00000594243 HECTD4Q9Y4D8 3996 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 A0A1B0GVY2 172 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 IGHV3-30P01768 117 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 IGHV3-33P01772 117 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 IGHV3-30-3P0DP02 117 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 IGHV3-30-5P0DP03 117 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 TNP2Q05952 138 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 FRZBQ92765 325 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 NAT8BQ9UHF3 227 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 URGCP-MRPS24S4R325 110 aa10.17□□□□□ -0.78
UPF1-202ENST00000594243 TRBV6-8A0A0A6YYG3 113 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 IBA57-AS1B1ANH7 110 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 RIGQ13278 110 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 KCNIP4Q6PIL6 250 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 NUP35Q8NFH5 326 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 HERC2O95714 4834 aa10.16□□□□□ -0.78
UPF1-202ENST00000594243 PNRC1Q12796 327 aaPredicted RBP10.15□□□□□ -0.78
UPF1-202ENST00000594243 A0A087WX48 190 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 SMIM27A0A1W2PRY6 76 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 UQCC3Q6UW78 93 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 NIT1Q86X76 327 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 GATD1Q8NB37 220 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 CHCHD7Q9BUK0 85 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 TMEM191AQ9H0A3 160 aa10.14□□□□□ -0.79
UPF1-202ENST00000594243 TMEM262E9PQX1 116 aa10.13□□□□□ -0.79
UPF1-202ENST00000594243 PPP1R2P9O14990 202 aa10.13□□□□□ -0.79
UPF1-202ENST00000594243 PKIAP61925 76 aa10.13□□□□□ -0.79
UPF1-202ENST00000594243 LAGE3Q14657 143 aa10.13□□□□□ -0.79
UPF1-202ENST00000594243 ELOBQ15370 118 aa10.13□□□□□ -0.79
UPF1-202ENST00000594243 Q6ZRN7 208 aaPredicted RBP10.13□□□□□ -0.79
UPF1-202ENST00000594243 TRBV25-1A0A075B6N4 114 aa10.12□□□□□ -0.79
UPF1-202ENST00000594243 DNAH17Q9UFH2 4485 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 TRAV8-3A0A0A6YYJ7 113 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 TRAV26-2A0A0B4J265 109 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 A0A1B0GW15 77 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 NTM-AS1Q6ZSK4 140 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 CHCHD5Q9BSY4 110 aa10.11□□□□□ -0.79
UPF1-202ENST00000594243 IGHV1-24A0A0C4DH33 117 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 EREGO14944 169 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 RAB4AP20338 218 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 IQCJQ1A5X6 159 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 Q8N3U1 123 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 ANAPC16Q96DE5 110 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 Q9HAA7 133 aa10.1□□□□□ -0.79
UPF1-202ENST00000594243 FAT2Q9NYQ8 4349 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 PSCAO43653 123 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 MT-ND4LP03901 98 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 MRAP2Q96G30 205 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 TM2D2Q9BX73 214 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 DNAH2Q9P225 4427 aa10.09□□□□□ -0.79
UPF1-202ENST00000594243 TMEM218A2RU14 115 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 F8W036 122 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 S100A8P05109 93 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 COTL1Q14019 142 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 AMN1Q8IY45 258 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 RPL39LQ96EH5 51 aaKnown RBP10.08□□□□□ -0.8
UPF1-202ENST00000594243 RNF185Q96GF1 192 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 KLK12Q9UKR0 248 aa10.08□□□□□ -0.8
UPF1-202ENST00000594243 TRBV6-5A0A0K0K1A5 114 aa10.07□□□□□ -0.8
UPF1-202ENST00000594243 CAMPP49913 170 aa10.07□□□□□ -0.8
UPF1-202ENST00000594243 COX11Q9Y6N1 276 aa10.07□□□□□ -0.8
UPF1-202ENST00000594243 SDHAF1A6NFY7 115 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 PPP1R17O96001 155 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 Q0VG73 95 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 MPV17L2Q567V2 206 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 ATRAIDQ6UW56 229 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 COMMD7Q86VX2 200 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 RMI2Q96E14 147 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 TMEM243Q9BU79 118 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 ST20Q9HBF5 79 aa10.06□□□□□ -0.8
UPF1-202ENST00000594243 A0A087WTM6 91 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 I3L3M4 83 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 NCR2O95944 276 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 ANGP03950 147 aaKnown RBP10.05□□□□□ -0.8
UPF1-202ENST00000594243 PMCHP20382 165 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 AMTP48728 403 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 HBBP68871 147 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 GAGE6Q13070 117 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 FAM104BQ5XKR9 115 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 MRPL54Q6P161 138 aaKnown RBP10.05□□□□□ -0.8
UPF1-202ENST00000594243 SPATA12Q7Z6I5 190 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 UBE2WQ96B02 151 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms