RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 LENEPQ9Y5L5 61 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 SMKR1H3BMG3 65 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 KLK9Q2XQG4 91 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 SCGB1D4Q6XE38 83 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 ZNF491Q8N8L2 437 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 KLK9Q9UKQ9 250 aa3.99□□□□□ -1.77
USP28-213ENST00000544967 IGHV4-30-2A0A087WSY4 118 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 IGHV4-31P0DP07 118 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 TIMM17AQ99595 171 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 HEATR1Q9H583 2144 aaKnown RBP3.98□□□□□ -1.77
USP28-213ENST00000544967 PRR14LQ5THK1 2151 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 C9JAW5 83 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 NDUFA3O95167 84 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 ZNRF1Q8ND25 227 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 SCGB3A1Q96QR1 104 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 C21orf62Q9NYP8 219 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 PCNX1Q96RV3 2341 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 LINC00643Q86TS7 51 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 ITPR3Q14573 2671 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 CREBBPQ92793 2442 aa3.98□□□□□ -1.77
USP28-213ENST00000544967 ABCA4P78363 2273 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 CACNA1DQ01668 2161 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 RNF223E7ERA6 249 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 HIST1H4AP62805 103 aaKnown RBP3.97□□□□□ -1.77
USP28-213ENST00000544967 C19orf54Q5BKX5 351 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 WFDC11Q8NEX6 87 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 NTN5Q8WTR8 489 aaPredicted RBP3.97□□□□□ -1.77
USP28-213ENST00000544967 AMELXQ99217 191 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 Q9UF83 564 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 NPFFO15130 113 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 TFF1P04155 84 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 FXYD7P58549 80 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 HILS1P60008 231 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 TMEM258P61165 79 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 LEAP2Q969E1 77 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 AGPAT4-IT1Q9H0P7 198 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 Q9H8V8 135 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 PLCE1Q9P212 2302 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 IGHV4-61A0A0C4DH41 118 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 K7EIM0 57 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 LEPROTO15243 131 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 SUMO2P61956 95 aaKnown RBP3.97□□□□□ -1.77
USP28-213ENST00000544967 CD164Q04900 197 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 C5orf38Q86SI9 138 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 PLEKHB2Q96CS7 222 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 DYNLRB1Q9NP97 96 aa3.97□□□□□ -1.77
USP28-213ENST00000544967 NOTCH2Q04721 2471 aa3.96□□□□□ -1.77
USP28-213ENST00000544967 IGLV4-69A0A075B6H9 119 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 IGHV7-4-1A0A0J9YVY3 117 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 H3BTX0 84 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 IGHV1-69P01742 117 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 COX7CP15954 63 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 PMVKQ15126 192 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 C10orf55Q5SWW7 151 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 LINC00528Q8N1L1 170 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 BPESC1Q9GZL8 116 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 CTSZQ9UBR2 303 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 TEX15Q9BXT5 2789 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 IGHV4OR15-8A0A075B7B6 117 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 A0A087WW49 117 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 H3BVH4 76 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 M0R1W7 72 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 COX6CP09669 75 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 C9orf153Q5TBE3 101 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 FAM216BQ8N7L0 139 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 LINC01356Q8N9X3 169 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 ROS1P08922 2347 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 HECTD1Q9ULT8 2610 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 FAM236DA0A1B0GTK5 79 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 ATOX1O00244 68 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 NXPH4O95158 308 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 FAM236CP0DP71 79 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 ZNF80P51504 273 aaPredicted RBP3.96□□□□□ -1.78
USP28-213ENST00000544967 C2orf66Q6UXQ4 117 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 Q6ZQT7 251 aa3.96□□□□□ -1.78
USP28-213ENST00000544967 CELSR1Q9NYQ6 3014 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 CMYA5Q8N3K9 4069 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 A0A0J9YXY3 114 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 B4DSR2 109 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 NDUFC2-KCTD14E9PQ53 114 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 ANXA2RQ3ZCQ2 193 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 RUSC1-AS1Q66K80 236 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 DAND5Q8N907 189 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 C17orf77Q96MU5 243 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 METTL26Q96S19 204 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 LOC107984640A0A0U1RRK4 108 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 IGIPA6NJ69 53 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 LINC01548A6NM66 108 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 ODF3BA8MYP8 253 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 LST1O00453 97 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 TIMM17BO60830 172 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 LINC00694P0DN24 101 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 GATA1P15976 413 aaPredicted RBP3.95□□□□□ -1.78
USP28-213ENST00000544967 HERVK_113P63121 156 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 CCL8P80075 99 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 ZNF876PQ49A33 203 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 C9orf47Q6ZRZ4 202 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 DEFB108BQ8NET1 73 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 DPH3P1Q9H4G8 78 aa3.95□□□□□ -1.78
USP28-213ENST00000544967 AGRNO00468 2067 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms