RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TRAV12-1A0A0B4J245 112 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 PLNP26678 52 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 RPL32P62910 135 aaKnown RBP11.94□□□□□ -0.5
COL4A1-204ENST00000543140 XCL2Q9UBD3 114 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 PROK1P58294 105 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 ORAOV1Q8WV07 137 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 NACAE9PAV3 2078 aa11.94□□□□□ -0.5
COL4A1-204ENST00000543140 TRBV27A0A0K0K1C4 114 aa11.93□□□□□ -0.5
COL4A1-204ENST00000543140 PRSS29PA6NIE9 313 aa11.93□□□□□ -0.5
COL4A1-204ENST00000543140 TRAV8-6A0A0B4J262 113 aa11.93□□□□□ -0.5
COL4A1-204ENST00000543140 TRBV6-5A0A0K0K1A5 114 aa11.93□□□□□ -0.5
COL4A1-204ENST00000543140 TAX1BP3O14907 124 aa11.93□□□□□ -0.5
COL4A1-204ENST00000543140 ZNF418Q8TF45 676 aaPredicted RBP11.93□□□□□ -0.5
COL4A1-204ENST00000543140 TSHBP01222 138 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 P0DMU3 169 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 FAM231AP0DMU4 169 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 FAM231CP0DMU5 169 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 TRPT1Q86TN4 253 aaKnown RBP11.92□□□□□ -0.5
COL4A1-204ENST00000543140 C16orf95Q9H693 158 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 IGHV3OR16-12A0A075B7B8 117 aa11.92□□□□□ -0.5
COL4A1-204ENST00000543140 ANK3Q12955 4377 aaKnown RBP11.91□□□□□ -0.5
COL4A1-204ENST00000543140 UBE2V1Q13404 147 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 VAMP3Q15836 100 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 STHQ8IWL8 128 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 TRAV25A0A0B4J276 109 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 IGIPA6NJ69 53 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 SIVA1O15304 175 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 SAP30O75446 220 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 INSP01308 110 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 EMP1P54849 157 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 HILS1P60008 231 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 NSUN5P1Q3KNT7 163 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 MAPKAPK5-AS1Q8N8E1 139 aa11.91□□□□□ -0.5
COL4A1-204ENST00000543140 OR11H12B2RN74 326 aa11.9□□□□□ -0.5
COL4A1-204ENST00000543140 M0R2P5 195 aa11.9□□□□□ -0.5
COL4A1-204ENST00000543140 ZNF415Q09FC8 603 aa11.9□□□□□ -0.5
COL4A1-204ENST00000543140 SCGB2A2Q13296 93 aa11.9□□□□□ -0.5
COL4A1-204ENST00000543140 HSD52Q0P140 79 aa11.89□□□□□ -0.51
COL4A1-204ENST00000543140 Q9UF83 564 aa11.89□□□□□ -0.51
COL4A1-204ENST00000543140 TRBV25-1A0A075B6N4 114 aa11.89□□□□□ -0.51
COL4A1-204ENST00000543140 C11orf72Q8NBR9 251 aa11.89□□□□□ -0.51
COL4A1-204ENST00000543140 MRPL16Q9NX20 251 aaKnown RBP11.89□□□□□ -0.51
COL4A1-204ENST00000543140 AZU1P20160 251 aa11.88□□□□□ -0.51
COL4A1-204ENST00000543140 RIPPLY3P57055 190 aa11.88□□□□□ -0.51
COL4A1-204ENST00000543140 Q6ZSN1 163 aa11.88□□□□□ -0.51
COL4A1-204ENST00000543140 OPRPNQ99935 248 aaPredicted RBP11.88□□□□□ -0.51
COL4A1-204ENST00000543140 SEC11AP67812 179 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 OR4C5Q8NGB2 326 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 CHAC1Q9BUX1 264 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 I3L3M4 83 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 LY6G6DO95868 133 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 JMJD8Q96S16 334 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 WFDC10AQ9H1F0 79 aa11.87□□□□□ -0.51
COL4A1-204ENST00000543140 A8MWV9 139 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 K7EP13 123 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 PCP4P48539 62 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 CFAP126Q5VTH2 177 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 FN1P02751 2386 aaKnown RBP11.86□□□□□ -0.51
COL4A1-204ENST00000543140 OTOGQ6ZRI0 2925 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 ADARB2-AS1A8MUL3 147 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 PMVKQ15126 192 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 C1orf158Q8N1D5 194 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 NAA38Q9BRA0 125 aaKnown RBP11.86□□□□□ -0.51
COL4A1-204ENST00000543140 CST9LQ9H4G1 147 aa11.86□□□□□ -0.51
COL4A1-204ENST00000543140 GCSHP23434 173 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 RNF151Q2KHN1 245 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 AMMECR1LQ6DCA0 310 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 UFSP1Q6NVU6 142 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 TMEM141Q96I45 108 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 IGLV4-69A0A075B6H9 119 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 C11orf86A6NJI1 115 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 RBX1P62877 108 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 TIMM17AQ99595 171 aa11.85□□□□□ -0.51
COL4A1-204ENST00000543140 OR11H2Q8NH07 326 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 HIGD1BQ9P298 99 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 CBY1Q9Y3M2 126 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 A6NDN8 102 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 RHOHQ15669 191 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 CLUHP3Q96NS8 147 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 TNFRSF18Q9Y5U5 241 aa11.84□□□□□ -0.51
COL4A1-204ENST00000543140 LINC01549A6NIU2 74 aa11.83□□□□□ -0.52
COL4A1-204ENST00000543140 C20orf203Q8NBC4 194 aa11.83□□□□□ -0.52
COL4A1-204ENST00000543140 RAB37Q96AX2 223 aa11.83□□□□□ -0.52
COL4A1-204ENST00000543140 LINC00467Q9BRT7 94 aa11.83□□□□□ -0.52
COL4A1-204ENST00000543140 PRADC1Q9BSG0 188 aa11.83□□□□□ -0.52
COL4A1-204ENST00000543140 FXYD2P54710 66 aa11.82□□□□□ -0.52
COL4A1-204ENST00000543140 SPXQ9BT56 116 aa11.82□□□□□ -0.52
COL4A1-204ENST00000543140 NDUFA7O95182 113 aa11.82□□□□□ -0.52
COL4A1-204ENST00000543140 KRTAP10-3P60369 221 aa11.82□□□□□ -0.52
COL4A1-204ENST00000543140 IGLV1-51P01701 117 aa11.81□□□□□ -0.52
COL4A1-204ENST00000543140 RPL35AP18077 110 aaKnown RBP11.81□□□□□ -0.52
COL4A1-204ENST00000543140 C2CD3Q4AC94 2353 aa11.81□□□□□ -0.52
COL4A1-204ENST00000543140 E9PLD3 99 aa11.81□□□□□ -0.52
COL4A1-204ENST00000543140 ZNRF2Q8NHG8 242 aa11.81□□□□□ -0.52
COL4A1-204ENST00000543140 TRGV1A0A0A0MS02 117 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 MYMXA0A1B0GTQ4 84 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 BEAN1Q3B7T3 259 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 PIK3CD-AS1Q5SR53 167 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 TMEM170BQ5T4T1 132 aa11.8□□□□□ -0.52
COL4A1-204ENST00000543140 EDA2RQ9HAV5 297 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms