RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 C10orf82Q8WW14 230 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 LZICQ8WZA0 190 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 PFDN5Q99471 154 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 RPRMQ9NS64 109 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 CCDC167Q9P0B6 97 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 HRNRQ86YZ3 2850 aaPredicted RBP-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 CDK5RAP2Q96SN8 1893 aa-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 KIAA0100Q14667 2235 aaKnown RBP-0.03□□□□□ -2.41
VPS13A-213ENST00000539950 OTOGQ6ZRI0 2925 aa-0.03□□□□□ -2.42
VPS13A-213ENST00000539950 CELSR2Q9HCU4 2923 aa-0.03□□□□□ -2.42
VPS13A-213ENST00000539950 SSPOA2VEC9 5147 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 TRBV10-3A0A0K0K1G6 114 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 APOC4-APOC2K7ER74 178 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 M0R129 80 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 PIN1P1O15428 100 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 NDUFB6O95139 128 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 SIX6O95475 246 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 PIPP12273 146 aaPredicted RBP-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 COPZ1P61923 177 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 UBE2G1P62253 170 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 BTG2P78543 158 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 S100A12P80511 92 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 COX6A2Q02221 97 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 SNRNP25Q9BV90 132 aaKnown RBP-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 CFTRP13569 1480 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 CASKIN1Q8WXD9 1431 aa-0.04□□□□□ -2.42
VPS13A-213ENST00000539950 MED13LQ71F56 2210 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 TRGV1A0A0A0MS02 117 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 FAM92AA1XBS5 289 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 K7ERU9 68 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 NDUFA2O43678 99 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 SPINK1P00995 79 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 IL5P05113 134 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 ACYP2P14621 99 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 SELENOWP63302 87 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 TSTD1Q8NFU3 115 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 SPTSSAQ969W0 71 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 PSMG3Q9BT73 122 aaPredicted RBP-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 SPRR2GQ9BYE4 73 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 ZFYVE26Q68DK2 2539 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 HIVEP3Q5T1R4 2406 aa-0.05□□□□□ -2.42
VPS13A-213ENST00000539950 F5P12259 2224 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 MYH13Q9UKX3 1938 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 K7EP13 123 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 HMGN1P05114 100 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 CCL18P55774 89 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 C12orf73Q69YU5 71 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 Q6AWC8 147 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 KCNRGQ8N5I3 272 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 Q8N8P6 123 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 CNFNQ9BYD5 112 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 CYP4F30PQ9H0H9 118 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 AGPAT4-IT1Q9H0P7 198 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 RERGLQ9H628 205 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 MBD5Q9P267 1494 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 BIVM-ERCC5R4GMW8 1640 aa-0.06□□□□□ -2.42
VPS13A-213ENST00000539950 NCOR2Q9Y618 2525 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 PARP14Q460N5 1801 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 TRAV1-2A0A0B4J238 106 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 A6NIN4 97 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 SPINK8P0C7L1 97 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 GCHFRP30047 84 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 ARPC4P59998 168 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 BAGE3Q86Y29 109 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 C1orf54Q8WWF1 131 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 COPS9Q8WXC6 57 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 LSM10Q969L4 123 aaKnown RBP-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 AMELXQ99217 191 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 LINC00470Q9BZP3 86 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 LINC00312Q9Y6C7 94 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 SERP1Q9Y6X1 66 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 U3KQA8 63 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 LAMC1P11047 1609 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 ZNF609O15014 1411 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 MYH6P13533 1939 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 IFT172Q9UG01 1749 aa-0.07□□□□□ -2.42
VPS13A-213ENST00000539950 QRICH2Q9H0J4 1663 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 IGSF10Q6WRI0 2623 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 COL7A1Q02388 2944 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 SHROOM2Q13796 1616 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 HCG22E2RYF7 251 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 FGF7P21781 194 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 RPL7L1Q6DKI1 246 aaKnown RBP-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 SSBP3-AS1Q7Z2R9 100 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 UBE2DNLQ8IWF7 75 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 ARL11Q969Q4 196 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 LENEPQ9Y5L5 61 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 CADP27708 2225 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 CACNA1AO00555 2505 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 NWD2Q9ULI1 1742 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 CHD9Q3L8U1 2897 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 CELSR1Q9NYQ6 3014 aa-0.08□□□□□ -2.42
VPS13A-213ENST00000539950 A2ML1A8K2U0 1454 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 MRC1P22897 1456 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 UNC79Q9P2D8 2635 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PTPRZ1P23471 2315 aaPredicted RBP-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 LRRC37A2A6NM11 1700 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PHLPP1O60346 1717 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PRDM2Q13029 1718 aa-0.09□□□□□ -2.42
VPS13A-213ENST00000539950 PPIP5K1Q6PFW1 1433 aa-0.09□□□□□ -2.42
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms