RNA–Protein interactions for RNA: ENST00000532370.1

CTSB-223, Transcript of cathepsin B, human

TSL 2

Gene CTSB, Length 693 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSB-223	ENST00000532370	GATC	O43716	136 aa	Known RBP	11.72	□□□□□ -0.53
CTSB-223	ENST00000532370	SPATA12	Q7Z6I5	190 aa		11.72	□□□□□ -0.53
CTSB-223	ENST00000532370	LINC01551	Q86U37	167 aa		11.72	□□□□□ -0.53
CTSB-223	ENST00000532370	NFE4	Q86UQ8	179 aa		11.72	□□□□□ -0.53
CTSB-223	ENST00000532370	IBA57-AS1	B1ANH7	110 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	KRTAP10-2	P60368	255 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	ERVFC1-1	P60608	527 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	TWIST1	Q15672	202 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	UQCC3	Q6UW78	93 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	FAM231D	Q6ZW35	169 aa		11.71	□□□□□ -0.53
CTSB-223	ENST00000532370	LINC00862	A6NCI5	91 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370		M0QY20	66 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	SUMO4	Q6EEV6	95 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	WDR73	Q6P4I2	378 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	DAZ4	Q86SG3	579 aa	Known RBP	11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	CNFN	Q9BYD5	112 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370		Q9HAA7	133 aa		11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	DAZ3	Q9NR90	486 aa	Known RBP	11.7	□□□□□ -0.54
CTSB-223	ENST00000532370	HSPG2	P98160	4391 aa		11.69	□□□□□ -0.54
CTSB-223	ENST00000532370	C16orf90	A8MZG2	172 aa		11.69	□□□□□ -0.54
CTSB-223	ENST00000532370	FUS	P35637	526 aa	Known RBP eCLIP	11.69	□□□□□ -0.54
CTSB-223	ENST00000532370	PGLYRP4	Q96LB8	373 aa		11.69	□□□□□ -0.54
CTSB-223	ENST00000532370	APOB	P04114	4563 aa	Known RBP	11.69	□□□□□ -0.54
CTSB-223	ENST00000532370	TRGC1	P0CF51	173 aa		11.68	□□□□□ -0.54
CTSB-223	ENST00000532370	FOXA3	P55318	350 aa	Predicted RBP	11.68	□□□□□ -0.54
CTSB-223	ENST00000532370	TMEM241	Q24JQ0	296 aa		11.68	□□□□□ -0.54
CTSB-223	ENST00000532370	NIT1	Q86X76	327 aa		11.68	□□□□□ -0.54
CTSB-223	ENST00000532370	NAT8	Q9UHE5	227 aa		11.68	□□□□□ -0.54
CTSB-223	ENST00000532370		A8MWL6	223 aa		11.67	□□□□□ -0.54
CTSB-223	ENST00000532370	COMMD7	Q86VX2	200 aa		11.67	□□□□□ -0.54
CTSB-223	ENST00000532370	DPH3P1	Q9H4G8	78 aa		11.67	□□□□□ -0.54
CTSB-223	ENST00000532370		A0A087WTM6	91 aa		11.66	□□□□□ -0.54
CTSB-223	ENST00000532370	TRBV6-8	A0A0A6YYG3	113 aa		11.66	□□□□□ -0.54
CTSB-223	ENST00000532370	CT83	Q5H943	113 aa		11.66	□□□□□ -0.54
CTSB-223	ENST00000532370	NTM-AS1	Q6ZSK4	140 aa		11.66	□□□□□ -0.54
CTSB-223	ENST00000532370	DNAJC30	Q96LL9	226 aa		11.66	□□□□□ -0.54
CTSB-223	ENST00000532370	RPL23	P62829	140 aa	Known RBP	11.65	□□□□□ -0.54
CTSB-223	ENST00000532370	OSTC	Q9NRP0	149 aa		11.65	□□□□□ -0.54
CTSB-223	ENST00000532370	TRAV26-2	A0A0B4J265	109 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370	RASL11A	Q6T310	242 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370	TSKU	Q8WUA8	353 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370	ISOC2	Q96AB3	205 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370	URGCP-MRPS24	S4R325	110 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370		V9GYV3	84 aa		11.64	□□□□□ -0.55
CTSB-223	ENST00000532370	HIGD1C	A8MV81	97 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370	TMEM262	E9PQX1	116 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370		H7C1H1	209 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370	PSCA	O43653	123 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370	LAGE3	Q14657	143 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370	ADIRF	Q15847	76 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370	DEFB104A	Q8WTQ1	72 aa		11.63	□□□□□ -0.55
CTSB-223	ENST00000532370		A0A087WX48	190 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	TMEM218	A2RU14	115 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	LRCOL1	A6NCL2	159 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	C15orf54	Q8N8G6	183 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	GATD1	Q8NB37	220 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	KLK12	Q9UKR0	248 aa		11.62	□□□□□ -0.55
CTSB-223	ENST00000532370	EREG	O14944	169 aa		11.61	□□□□□ -0.55
CTSB-223	ENST00000532370	ADCYAP1	P18509	176 aa		11.61	□□□□□ -0.55
CTSB-223	ENST00000532370	CHCHD5	Q9BSY4	110 aa		11.61	□□□□□ -0.55
CTSB-223	ENST00000532370	GFRA4	Q9GZZ7	299 aa		11.61	□□□□□ -0.55
CTSB-223	ENST00000532370	NIT2	Q9NQR4	276 aa		11.61	□□□□□ -0.55
CTSB-223	ENST00000532370	TRAV8-3	A0A0A6YYJ7	113 aa		11.6	□□□□□ -0.55
CTSB-223	ENST00000532370	PNRC1	Q12796	327 aa	Predicted RBP	11.6	□□□□□ -0.55
CTSB-223	ENST00000532370	MPV17L2	Q567V2	206 aa		11.6	□□□□□ -0.55
CTSB-223	ENST00000532370	SMIM15	Q7Z3B0	74 aa		11.6	□□□□□ -0.55
CTSB-223	ENST00000532370		A0A1B0GUT8	65 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	KCNIP4	Q6PIL6	250 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	NUP35	Q8NFH5	326 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	UBE2W	Q96B02	151 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	RPL39L	Q96EH5	51 aa	Known RBP	11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	CHCHD7	Q9BUK0	85 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	PGPEP1	Q9NXJ5	209 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	PCLO	Q9Y6V0	5065 aa		11.59	□□□□□ -0.55
CTSB-223	ENST00000532370	FAM231B	A6NCW3	169 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	GAGE6	Q13070	117 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	WFDC2	Q14508	124 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	TMEM97	Q5BJF2	176 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	MAPKAPK5-AS1	Q8N8E1	139 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370		Q8N976	141 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	BORCS7	Q96B45	105 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	TM2D2	Q9BX73	214 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	SEC11C	Q9BY50	192 aa		11.58	□□□□□ -0.56
CTSB-223	ENST00000532370	TRBV25-1	A0A075B6N4	114 aa		11.57	□□□□□ -0.56
CTSB-223	ENST00000532370	GAS8-AS1	O95177	125 aa		11.57	□□□□□ -0.56
CTSB-223	ENST00000532370	IQCJ	Q1A5X6	159 aa		11.57	□□□□□ -0.56
CTSB-223	ENST00000532370	C10orf91	Q5T1B1	145 aa		11.57	□□□□□ -0.56
CTSB-223	ENST00000532370	ATRAID	Q6UW56	229 aa		11.57	□□□□□ -0.56
CTSB-223	ENST00000532370	IGHV1-24	A0A0C4DH33	117 aa		11.56	□□□□□ -0.56
CTSB-223	ENST00000532370	ENHO	Q6UWT2	76 aa		11.56	□□□□□ -0.56
CTSB-223	ENST00000532370	ABCA13	Q86UQ4	5058 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	IGKV2D-24	A0A075B6R9	120 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370		F8W036	122 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	LECT2	O14960	151 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	ANG	P03950	147 aa	Known RBP	11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	RBX1	P62877	108 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	ELOB	Q15370	118 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	RNF185	Q96GF1	192 aa		11.55	□□□□□ -0.56
CTSB-223	ENST00000532370	CARHSP1	Q9Y2V2	147 aa	Known RBP	11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 150.3 ms