RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 SLC25A20O43772 301 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 ACYP1P07311 99 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 CCL4P13236 92 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 UBE2D1P51668 147 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 DYNLT3P51808 116 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 RPL30P62888 115 aaKnown RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 SUPT4H1P63272 117 aaKnown RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 C6orf99Q4VX62 202 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 CLLU1OSQ5K130 101 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 ZNF678Q5SXM1 525 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 GDF5OSQ5U4N7 250 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 FAM104BQ5XKR9 115 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 C7orf65Q6ZTY9 151 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 RPS27LQ71UM5 84 aaKnown RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 SMCR5Q8TEV8 140 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 CHCHD10Q8WYQ3 142 aaPredicted RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 SLC50A1Q9BRV3 221 aa2.22□□□□□ -2.05
CD44-217ENST00000525348 HEATR1Q9H583 2144 aaKnown RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 NUP214P35658 2090 aaPredicted RBP2.22□□□□□ -2.05
CD44-217ENST00000525348 MYOFQ9NZM1 2061 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 CACNA1GO43497 2377 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 DCHS1Q96JQ0 3298 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 A0A096LNJ9 63 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 IGHV3-64DA0A0J9YX35 117 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 A0A0J9YXV3 536 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 FAM223BA6NKX1 122 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 C12orf77C9JDV5 145 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 E7EQL1 145 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 H3BMM0 161 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 TECTAO75443 2155 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 LEPROTL1O95214 131 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 IGLV3-27P01718 113 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 IL4P05112 153 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 ZNF22P17026 224 aaPredicted RBP2.21□□□□□ -2.06
CD44-217ENST00000525348 COX7A1P24310 79 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 XCL1P47992 114 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 PCBD1P61457 104 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 DEFB103AP81534 67 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 RBM3P98179 157 aaKnown RBP2.21□□□□□ -2.06
CD44-217ENST00000525348 FAM229BQ4G0N7 80 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 LINC01554Q52M75 96 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 C1orf100Q5SVJ3 147 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 PDPNQ86YL7 162 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 UBE2WQ96B02 151 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 ZNF714Q96N38 554 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 XCL2Q9UBD3 114 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 V9GYV3 84 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 CHD7Q9P2D1 2997 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 MPDZO75970 2070 aa2.21□□□□□ -2.06
CD44-217ENST00000525348 DSCAMO60469 2012 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 IGLV4-69A0A075B6H9 119 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 IGLV3-9A0A075B6K5 115 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 TRBV25-1A0A075B6N4 114 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 E7EUB6 86 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 PSPHP1O15172 72 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 PRB1P04280 392 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 BLCAPP62952 87 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 UBE2BP63146 152 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 ADIGQ0VDE8 80 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 Q1T7F1 81 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 FBXL19-AS1Q494R0 122 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 PATE2Q6UY27 113 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 NDUFA11Q86Y39 141 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 SLC25A29Q8N8R3 303 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 NKAPP1Q8N9T2 125 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 IFI27L1Q96BM0 104 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 BPESC1Q9GZL8 116 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 CACNA1BQ00975 2339 aa2.2□□□□□ -2.06
CD44-217ENST00000525348 DSCAML1Q8TD84 2053 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 IGLV3-12A0A075B6K2 115 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 TRBV10-2A0A0K0K1G8 114 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 TEX49A0A1B0GTD5 131 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 IQCF6A8MYZ5 107 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 K7EMI3 77 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 PEX7O00628 323 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 IGKV1-16P04430 117 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 ZNF138P52744 262 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 MOBPQ13875 183 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 RHOHQ15669 191 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 GUSBP11Q6P575 273 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 MDP1Q86V88 176 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 ITLN2Q8WWU7 325 aaPredicted RBP2.19□□□□□ -2.06
CD44-217ENST00000525348 SLC25A2Q9BXI2 301 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 LINC00597Q9H2U6 94 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 ZNF706Q9Y5V0 76 aaPredicted RBP2.19□□□□□ -2.06
CD44-217ENST00000525348 ZFHX2Q9C0A1 2572 aaPredicted RBP2.19□□□□□ -2.06
CD44-217ENST00000525348 MYO15AQ9UKN7 3530 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 TRANK1O15050 2925 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 DMXL1Q9Y485 3027 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 CFAP47Q6ZTR5 3102 aa2.19□□□□□ -2.06
CD44-217ENST00000525348 ZDBF2Q9HCK1 2354 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 SPTBN4Q9H254 2564 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 IGKV2D-26A0A0A0MRZ7 120 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 TRAV13-2A0A0B4J235 113 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 A0A0B4J2C4 111 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 SMIM27A0A1W2PRY6 76 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 LINC01549A6NIU2 74 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 LOC730098B7Z3J9 87 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 H3BVH4 76 aa2.18□□□□□ -2.06
CD44-217ENST00000525348 BCE1O60756 84 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 934.9 ms