RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 MRPL53Q96EL3 112 aaKnown RBP10.04□□□□□ -0.8
TCOF1-213ENST00000514442 EML5Q05BV3 1969 aa10.04□□□□□ -0.8
TCOF1-213ENST00000514442 IGLC6P0CF74 106 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 NOP10Q9NPE3 64 aaKnown RBP10.03□□□□□ -0.8
TCOF1-213ENST00000514442 M0QXV9 152 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 FANCD2OSQ96PS1 177 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 A0A1B0GX51 115 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 SS18Q15532 418 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 C1orf43Q9BWL3 253 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 HIVEP2P31629 2446 aa10.03□□□□□ -0.8
TCOF1-213ENST00000514442 HERVK_113P63121 156 aa10.02□□□□□ -0.8
TCOF1-213ENST00000514442 UNQ9165/PRO28630Q6UXU0 137 aa10.02□□□□□ -0.8
TCOF1-213ENST00000514442 LINC00643Q86TS7 51 aa10.02□□□□□ -0.8
TCOF1-213ENST00000514442 CRIP1P50238 77 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 IGLV2-11P01706 119 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 SHISA2Q6UWI4 295 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 NEXN-AS1Q8NBZ9 246 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 DNAJC30Q96LL9 226 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 U3KQE9 123 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 APOC4P55056 127 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 RBMY1FQ15415 496 aaKnown RBP10.02□□□□□ -0.81
TCOF1-213ENST00000514442 HIST2H2BCQ6DN03 193 aa10.02□□□□□ -0.81
TCOF1-213ENST00000514442 CITED2Q99967 270 aaPredicted RBP10.02□□□□□ -0.81
TCOF1-213ENST00000514442 RS1O15537 224 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 IGHG2P01859 326 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 HHLA3Q9XRX5 114 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 ODF3BA8MYP8 253 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 NDUFA7O95182 113 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 RHOHQ15669 191 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 CLEC2BQ92478 149 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 DNAH12Q6ZR08 3092 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 LGALS9O00182 355 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 P0DMU3 169 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 FAM231AP0DMU4 169 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 FAM231CP0DMU5 169 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 RNF185Q96GF1 192 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 CDIP1Q9H305 208 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 JPT2Q9H910 190 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 LINC00574Q9H8X3 128 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 CCDC168Q8NDH2 2452 aa10.01□□□□□ -0.81
TCOF1-213ENST00000514442 TLN1Q9Y490 2541 aaKnown RBP10□□□□□ -0.81
TCOF1-213ENST00000514442 SLC25A29Q8N8R3 303 aa10□□□□□ -0.81
TCOF1-213ENST00000514442 TMEM243Q9BU79 118 aa10□□□□□ -0.81
TCOF1-213ENST00000514442 A6NDX4 124 aa10□□□□□ -0.81
TCOF1-213ENST00000514442 PSCAO43653 123 aa10□□□□□ -0.81
TCOF1-213ENST00000514442 ZNF80P51504 273 aaPredicted RBP10□□□□□ -0.81
TCOF1-213ENST00000514442 CLPSL2Q6UWE3 100 aa10□□□□□ -0.81
TCOF1-213ENST00000514442 A0A0J9YY99 117 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 TNCP24821 2201 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 CPAMD8Q8IZJ3 1885 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 CDSNQ15517 529 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 TIMM17AQ99595 171 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 LENEPQ9Y5L5 61 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 DSCAMO60469 2012 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 KIAA1549Q9HCM3 1950 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 SONP18583 2426 aaKnown RBP9.99□□□□□ -0.81
TCOF1-213ENST00000514442 NFE4Q86UQ8 179 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 MRAPQ8TCY5 172 aa9.99□□□□□ -0.81
TCOF1-213ENST00000514442 LRRC75A-AS1Q8N1F1 130 aa9.98□□□□□ -0.81
TCOF1-213ENST00000514442 MRPS12O15235 138 aaKnown RBP9.98□□□□□ -0.81
TCOF1-213ENST00000514442 PFN2P35080 140 aa9.98□□□□□ -0.81
TCOF1-213ENST00000514442 ZMAT4Q9H898 229 aa9.98□□□□□ -0.81
TCOF1-213ENST00000514442 NAV2Q8IVL1 2488 aa9.97□□□□□ -0.81
TCOF1-213ENST00000514442 CCDC140Q96MF4 163 aa9.97□□□□□ -0.81
TCOF1-213ENST00000514442 WNK1Q9H4A3 2382 aa9.97□□□□□ -0.81
TCOF1-213ENST00000514442 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.97□□□□□ -0.81
TCOF1-213ENST00000514442 A0A096LNJ9 63 aa9.97□□□□□ -0.81
TCOF1-213ENST00000514442 IGKV2-29A2NJV5 120 aaPredicted RBP9.97□□□□□ -0.81
TCOF1-213ENST00000514442 RPL39P62891 51 aaKnown RBP9.97□□□□□ -0.81
TCOF1-213ENST00000514442 WFDC11Q8NEX6 87 aa9.97□□□□□ -0.81
TCOF1-213ENST00000514442 LINC00694P0DN24 101 aa9.96□□□□□ -0.81
TCOF1-213ENST00000514442 TRAV13-2A0A0B4J235 113 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 IGHV3-33P01772 117 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 SUMO4Q6EEV6 95 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 IMUPQ9GZP8 106 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 HIVEP3Q5T1R4 2406 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 NACAE9PAV3 2078 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 A0A0J9YXV3 536 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 IGHV3-30P01768 117 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 IGHV3-30-5P0DP03 117 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 C11orf71Q6IPW1 123 aa9.96□□□□□ -0.82
TCOF1-213ENST00000514442 IGKV3D-7A0A0C4DH55 119 aa9.95□□□□□ -0.82
TCOF1-213ENST00000514442 UBL5Q9BZL1 73 aa9.95□□□□□ -0.82
TCOF1-213ENST00000514442 DNAJC9-AS1A6NH13 148 aa9.95□□□□□ -0.82
TCOF1-213ENST00000514442 ZNF843Q8N446 348 aa9.95□□□□□ -0.82
TCOF1-213ENST00000514442 TNFRSF13BO14836 293 aaPredicted RBP9.95□□□□□ -0.82
TCOF1-213ENST00000514442 TRBV30A0A0K0K1B3 111 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 CRYGBP07316 175 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 GPHB5Q86YW7 130 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 PLXNB1O43157 2135 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 SMIM9A6NGZ8 99 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 NXPH4O95158 308 aa9.94□□□□□ -0.82
TCOF1-213ENST00000514442 ANGP03950 147 aaKnown RBP9.93□□□□□ -0.82
TCOF1-213ENST00000514442 IGHV4-31P0DP07 118 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 CEP295Q9C0D2 2601 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 UBE2D3P61077 147 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 UBE2D2P62837 147 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 C9orf47Q6ZRZ4 202 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 ESM1Q9NQ30 184 aa9.93□□□□□ -0.82
TCOF1-213ENST00000514442 K7EMT4 169 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms