RNA–Protein interactions for RNA: ENST00000508685.1

SH3RF1-203, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 1 (best)

Gene SH3RF1, Length 2,020 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-203ENST00000508685 DUX3Q96PT4 197 aa8.21□□□□□ -1.1
SH3RF1-203ENST00000508685 K7ERJ3 54 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 SLURP1P55000 103 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 RPL39LQ96EH5 51 aaKnown RBP8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 KIR2DL4Q99706 377 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 KIF25-AS1Q9Y6Z4 181 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 GNRH2O43555 120 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 TIMM17AQ99595 171 aa8.2□□□□□ -1.1
SH3RF1-203ENST00000508685 TRBV6-5A0A0K0K1A5 114 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 POLR2KP53803 58 aaKnown RBP8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 RPL24P83731 157 aaKnown RBP8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 PMVKQ15126 192 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 LGALS9O00182 355 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 LINC00315P59091 139 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 C11orf44Q8N8P7 122 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 SYT8Q8NBV8 401 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 PRADC1Q9BSG0 188 aa8.19□□□□□ -1.1
SH3RF1-203ENST00000508685 C2CD3Q4AC94 2353 aa8.18□□□□□ -1.1
SH3RF1-203ENST00000508685 ZNF688P0C7X2 276 aa8.18□□□□□ -1.1
SH3RF1-203ENST00000508685 LYRM7Q5U5X0 104 aa8.18□□□□□ -1.1
SH3RF1-203ENST00000508685 IGIPA6NJ69 53 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 ZNF815PA8K554 130 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 RIPPLY3P57055 190 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 GAGE13Q4V321 117 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 SCGB1D4Q6XE38 83 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 ZFP2Q6ZN57 461 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 KLHL30-AS1Q8NEE0 82 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 C4orf3Q8WVX3 66 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 WFDC12Q8WWY7 111 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 SORL1Q92673 2214 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 FN1P02751 2386 aaKnown RBP8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 SCGB1A1P11684 91 aa8.17□□□□□ -1.1
SH3RF1-203ENST00000508685 WNK1Q9H4A3 2382 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 TRBV27A0A0K0K1C4 114 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 TEX48A0A1B0GUV7 120 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 C11orf86A6NJI1 115 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 SRSF9Q13242 221 aaKnown RBP eCLIP8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 RHOHQ15669 191 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 SPANXB1Q9NS25 103 aaPredicted RBP8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 TP53TG1Q9Y2A0 90 aa8.16□□□□□ -1.1
SH3RF1-203ENST00000508685 INAFM1C9JVW0 142 aa8.15□□□□□ -1.1
SH3RF1-203ENST00000508685 DUSP14O95147 198 aaKnown RBP8.15□□□□□ -1.1
SH3RF1-203ENST00000508685 CD7P09564 240 aa8.15□□□□□ -1.1
SH3RF1-203ENST00000508685 SNRPD3P62318 126 aaKnown RBP8.15□□□□□ -1.1
SH3RF1-203ENST00000508685 SUMO4Q6EEV6 95 aa8.15□□□□□ -1.1
SH3RF1-203ENST00000508685 A0A1W2PRX2 142 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 F5H697 171 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 K7EQG2 157 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 CRYGDP07320 174 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 UBE2D1P51668 147 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 CD300EQ496F6 205 aaPredicted RBP8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 DLX4Q92988 240 aaPredicted RBP8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 C9orf85Q96MD7 179 aa8.15□□□□□ -1.11
SH3RF1-203ENST00000508685 SDHAF1A6NFY7 115 aa8.14□□□□□ -1.11
SH3RF1-203ENST00000508685 SPRY2O43597 315 aa8.14□□□□□ -1.11
SH3RF1-203ENST00000508685 IGKV3-20P01619 116 aa8.14□□□□□ -1.11
SH3RF1-203ENST00000508685 AGRNO00468 2067 aa8.14□□□□□ -1.11
SH3RF1-203ENST00000508685 JMJD1CQ15652 2540 aa8.14□□□□□ -1.11
SH3RF1-203ENST00000508685 IGLV4-69A0A075B6H9 119 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 IGHV3-16A0A0C4DH30 117 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 H3BMG7 143 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 RNASE1P07998 156 aaKnown RBP8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 CD28P10747 220 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 ZNF876PQ49A33 203 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 TRPT1Q86TN4 253 aaKnown RBP8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 ATP6V0E2Q8NHE4 81 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 SIGMAR1Q99720 223 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 MRPL16Q9NX20 251 aaKnown RBP8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 A0A0J9YX75 114 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 TSHBP01222 138 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 WFDC2Q14508 124 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 NSUN5P1Q3KNT7 163 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 MORN3Q6PF18 240 aaPredicted RBP8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 LINC01006Q8NI28 216 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 PGPEP1Q9NXJ5 209 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 PRO0461Q9UI25 63 aa8.13□□□□□ -1.11
SH3RF1-203ENST00000508685 TRAV12-3A0A0B4J271 114 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 TMEM238C9JI98 176 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 NFE4Q86UQ8 179 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 RAX2Q96IS3 184 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 TRGV11A0A075B6L2 103 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 TRBV20-1A0A075B6N2 111 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 IGHV1OR15-1A0A075B7D0 117 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 A0A0J9YY99 117 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 CRLF1O75462 422 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 TMEM61Q8N0U2 210 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 SLC25A29Q8N8R3 303 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 CITED2Q99967 270 aaPredicted RBP8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 VCX2Q9H322 139 aa8.12□□□□□ -1.11
SH3RF1-203ENST00000508685 TRAV12-2A0A075B6T6 113 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 GAGE12HA6NDE8 117 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 M0QY20 66 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 HILS1P60008 231 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 SPATA25Q9BR10 227 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 EDA2RQ9HAV5 297 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 PEMTQ9UBM1 199 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 MUC4Q99102 2169 aa8.11□□□□□ -1.11
SH3RF1-203ENST00000508685 A0A087WWL8 130 aa8.1□□□□□ -1.11
SH3RF1-203ENST00000508685 ETDBQ3ZM63 59 aa8.1□□□□□ -1.11
SH3RF1-203ENST00000508685 TMEM170BQ5T4T1 132 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 148.7 ms