RNA–Protein interactions for RNA: ENST00000505397.1

LIN54-204, Transcript of lin-54 DREAM MuvB core complex component, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIN54, Length 2,742 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIN54-204ENST00000505397 SCGB2A2Q13296 93 aa12.54□□□□□ -0.4
LIN54-204ENST00000505397 KIR2DL4Q99706 377 aa12.54□□□□□ -0.4
LIN54-204ENST00000505397 SDHAF1A6NFY7 115 aa12.54□□□□□ -0.4
LIN54-204ENST00000505397 RPL24P83731 157 aaKnown RBP12.54□□□□□ -0.4
LIN54-204ENST00000505397 SPANXB1Q9NS25 103 aaPredicted RBP12.54□□□□□ -0.4
LIN54-204ENST00000505397 HECTD1Q9ULT8 2610 aa12.54□□□□□ -0.4
LIN54-204ENST00000505397 H3BMG7 143 aa12.53□□□□□ -0.4
LIN54-204ENST00000505397 RPL39P62891 51 aaKnown RBP12.53□□□□□ -0.4
LIN54-204ENST00000505397 WFDC2Q14508 124 aa12.53□□□□□ -0.4
LIN54-204ENST00000505397 PRO0461Q9UI25 63 aa12.53□□□□□ -0.4
LIN54-204ENST00000505397 UBE2D1P51668 147 aa12.53□□□□□ -0.4
LIN54-204ENST00000505397 K7EQG2 157 aa12.53□□□□□ -0.4
LIN54-204ENST00000505397 CD300EQ496F6 205 aaPredicted RBP12.53□□□□□ -0.4
LIN54-204ENST00000505397 ZNF688P0C7X2 276 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 ZNF876PQ49A33 203 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 KHDC1LQ5JSQ8 128 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 KLHL30-AS1Q8NEE0 82 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 MDFICQ9P1T7 246 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 F5H697 171 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 M0QY20 66 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 SYNJ2BPP57105 145 aa12.52□□□□□ -0.41
LIN54-204ENST00000505397 HOXD3P31249 432 aaPredicted RBP12.51□□□□□ -0.41
LIN54-204ENST00000505397 AMTNQ6UX39 209 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 SCGB1D4Q6XE38 83 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 Q6ZSV7 163 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 TMEM238LA0A1B0GVL6 79 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 A6NJY4 79 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 HERVK_113P61574 105 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 Q8N1Y9 231 aa12.51□□□□□ -0.41
LIN54-204ENST00000505397 A0A0J9YY99 117 aa12.5□□□□□ -0.41
LIN54-204ENST00000505397 SNRPD3P62318 126 aaKnown RBP12.5□□□□□ -0.41
LIN54-204ENST00000505397 ZNRF2Q8NHG8 242 aa12.5□□□□□ -0.41
LIN54-204ENST00000505397 TRAV12-2A0A075B6T6 113 aa12.5□□□□□ -0.41
LIN54-204ENST00000505397 SYT8Q8NBV8 401 aa12.5□□□□□ -0.41
LIN54-204ENST00000505397 EMP1P54849 157 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 NSUN5P1Q3KNT7 163 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 GAGE13Q4V321 117 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 DEFB104AQ8WTQ1 72 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 ESM1Q9NQ30 184 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 PGPEP1Q9NXJ5 209 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 IGHV1OR15-1A0A075B7D0 117 aa12.49□□□□□ -0.41
LIN54-204ENST00000505397 RHOHQ15669 191 aa12.48□□□□□ -0.41
LIN54-204ENST00000505397 FAM74A4Q5TZK3 123 aa12.48□□□□□ -0.41
LIN54-204ENST00000505397 TSPEAR-AS2P59090 65 aa12.48□□□□□ -0.41
LIN54-204ENST00000505397 SRSF9Q13242 221 aaKnown RBP eCLIP12.48□□□□□ -0.41
LIN54-204ENST00000505397 AMELXQ99217 191 aa12.48□□□□□ -0.41
LIN54-204ENST00000505397 DEFB136Q30KP8 78 aa12.47□□□□□ -0.41
LIN54-204ENST00000505397 NFE4Q86UQ8 179 aa12.47□□□□□ -0.41
LIN54-204ENST00000505397 C4orf3Q8WVX3 66 aa12.47□□□□□ -0.41
LIN54-204ENST00000505397 ZNF256Q9Y2P7 627 aaPredicted RBP12.47□□□□□ -0.41
LIN54-204ENST00000505397 AKAP9Q99996 3911 aa12.47□□□□□ -0.41
LIN54-204ENST00000505397 TRPT1Q86TN4 253 aaKnown RBP12.47□□□□□ -0.41
LIN54-204ENST00000505397 IGKV3-20P01619 116 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 P0DMU3 169 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 FAM231AP0DMU4 169 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 FAM231CP0DMU5 169 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 C18orf65Q6ZTR6 163 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 ZNF418Q8TF45 676 aaPredicted RBP12.46□□□□□ -0.41
LIN54-204ENST00000505397 MRPL16Q9NX20 251 aaKnown RBP12.46□□□□□ -0.41
LIN54-204ENST00000505397 ZNF56Q15929 161 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 SPINK13Q1W4C9 94 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 ETDBQ3ZM63 59 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 SH2D6Q7Z4S9 175 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 SLC25A29Q8N8R3 303 aa12.46□□□□□ -0.41
LIN54-204ENST00000505397 TSPAN13O95857 204 aa12.46□□□□□ -0.42
LIN54-204ENST00000505397 MTORP42345 2549 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 IGHV3-30P01768 117 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 IGHV3-30-5P0DP03 117 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 SLURP1P55000 103 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 UBE2D3P61077 147 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 UBE2D2P62837 147 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 TMEM170BQ5T4T1 132 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 TCTEX1D4Q5JR98 221 aa12.45□□□□□ -0.42
LIN54-204ENST00000505397 RNASE1P07998 156 aaKnown RBP12.44□□□□□ -0.42
LIN54-204ENST00000505397 NDUFA11Q86Y39 141 aa12.44□□□□□ -0.42
LIN54-204ENST00000505397 SPAG8Q99932 426 aaPredicted RBP12.44□□□□□ -0.42
LIN54-204ENST00000505397 J3QR89 54 aa12.44□□□□□ -0.42
LIN54-204ENST00000505397 C20orf203Q8NBC4 194 aa12.44□□□□□ -0.42
LIN54-204ENST00000505397 PEMTQ9UBM1 199 aa12.44□□□□□ -0.42
LIN54-204ENST00000505397 TMEM238C9JI98 176 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 EDA2RQ9HAV5 297 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 NOTCH2Q04721 2471 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 HIVEP2P31629 2446 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 J3QQQ9 107 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 CFAP126Q5VTH2 177 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 DLX4Q92988 240 aaPredicted RBP12.43□□□□□ -0.42
LIN54-204ENST00000505397 SMR3AQ99954 134 aa12.43□□□□□ -0.42
LIN54-204ENST00000505397 I3L3M4 83 aa12.42□□□□□ -0.42
LIN54-204ENST00000505397 MTURNQ8N3F0 131 aa12.42□□□□□ -0.42
LIN54-204ENST00000505397 OPRPNQ99935 248 aaPredicted RBP12.42□□□□□ -0.42
LIN54-204ENST00000505397 TMEM223A0PJW6 202 aa12.42□□□□□ -0.42
LIN54-204ENST00000505397 SPATA25Q9BR10 227 aa12.42□□□□□ -0.42
LIN54-204ENST00000505397 TRGV11A0A075B6L2 103 aa12.41□□□□□ -0.42
LIN54-204ENST00000505397 SMCPP49901 116 aaPredicted RBP12.41□□□□□ -0.42
LIN54-204ENST00000505397 DUX3Q96PT4 197 aa12.41□□□□□ -0.42
LIN54-204ENST00000505397 TSSC4Q9Y5U2 329 aaPredicted RBP12.41□□□□□ -0.42
LIN54-204ENST00000505397 GAGE12HA6NDE8 117 aa12.41□□□□□ -0.42
LIN54-204ENST00000505397 CFC1BP0CG36 223 aa12.41□□□□□ -0.42
LIN54-204ENST00000505397 CFC1P0CG37 223 aa12.41□□□□□ -0.42
LIN54-204ENST00000505397 LEPROTO15243 131 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms