RNA–Protein interactions for RNA: ENST00000497544.2

CTSD-206, Transcript of cathepsin D, humanhuman

TSL 2

Gene CTSD, Length 783 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSD-206ENST00000497544 FAM231AP0DMU4 169 aa13.91□□□□□ -0.18
CTSD-206ENST00000497544 FAM231CP0DMU5 169 aa13.91□□□□□ -0.18
CTSD-206ENST00000497544 SUMO4Q6EEV6 95 aa13.91□□□□□ -0.18
CTSD-206ENST00000497544 NEGR1Q7Z3B1 354 aa13.91□□□□□ -0.18
CTSD-206ENST00000497544 SH2D6Q7Z4S9 175 aa13.91□□□□□ -0.18
CTSD-206ENST00000497544 GAGE12JA6NER3 117 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 RPL36AP83881 106 aaKnown RBP13.9□□□□□ -0.18
CTSD-206ENST00000497544 GAGE1Q13065 139 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 GAGE4Q13068 117 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 GAGE5Q13069 117 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 GAGE13Q4V321 117 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 AMN1Q8IY45 258 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 ZNRF2Q8NHG8 242 aa13.9□□□□□ -0.18
CTSD-206ENST00000497544 RPL36ALQ969Q0 106 aaKnown RBP13.9□□□□□ -0.18
CTSD-206ENST00000497544 M0QY20 66 aa13.89□□□□□ -0.19
CTSD-206ENST00000497544 RAB4AP20338 218 aa13.89□□□□□ -0.19
CTSD-206ENST00000497544 RASL11AQ6T310 242 aa13.89□□□□□ -0.19
CTSD-206ENST00000497544 ATRAIDQ6UW56 229 aa13.89□□□□□ -0.19
CTSD-206ENST00000497544 Q9UF83 564 aa13.89□□□□□ -0.19
CTSD-206ENST00000497544 CCL18P55774 89 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 FAM104BQ5XKR9 115 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 NEXN-AS1Q8NBZ9 246 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 ATP6V0E2Q8NHE4 81 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 FRZBQ92765 325 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 RNF185Q96GF1 192 aa13.88□□□□□ -0.19
CTSD-206ENST00000497544 TRBV7-3A0A075B6L6 115 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 TRAV26-2A0A0B4J265 109 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 UBE2DNLQ8IWF7 75 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 GATD1Q8NB37 220 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 DNAJC30Q96LL9 226 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 NIT2Q9NQR4 276 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 TNFRSF18Q9Y5U5 241 aa13.87□□□□□ -0.19
CTSD-206ENST00000497544 MRAP2Q96G30 205 aa13.86□□□□□ -0.19
CTSD-206ENST00000497544 ESRGQ1W209 222 aa13.85□□□□□ -0.19
CTSD-206ENST00000497544 LGALS9CQ6DKI2 356 aa13.85□□□□□ -0.19
CTSD-206ENST00000497544 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.85□□□□□ -0.19
CTSD-206ENST00000497544 LY6G6CO95867 125 aa13.84□□□□□ -0.19
CTSD-206ENST00000497544 MRPL51Q4U2R6 128 aaKnown RBP13.84□□□□□ -0.19
CTSD-206ENST00000497544 LYPD5Q6UWN5 251 aa13.84□□□□□ -0.19
CTSD-206ENST00000497544 UBE2D3P61077 147 aa13.83□□□□□ -0.2
CTSD-206ENST00000497544 UBE2D2P62837 147 aa13.83□□□□□ -0.2
CTSD-206ENST00000497544 COX19Q49B96 90 aa13.83□□□□□ -0.2
CTSD-206ENST00000497544 SMCO4Q9NRQ5 59 aa13.83□□□□□ -0.2
CTSD-206ENST00000497544 LINC00694P0DN24 101 aa13.82□□□□□ -0.2
CTSD-206ENST00000497544 CKS2P33552 79 aa13.82□□□□□ -0.2
CTSD-206ENST00000497544 ELOBQ15370 118 aa13.82□□□□□ -0.2
CTSD-206ENST00000497544 OR10J3Q5JRS4 329 aa13.82□□□□□ -0.2
CTSD-206ENST00000497544 GTSF1LQ9H1H1 148 aa13.82□□□□□ -0.2
CTSD-206ENST00000497544 PPP1R17O96001 155 aa13.81□□□□□ -0.2
CTSD-206ENST00000497544 TMEM136Q6ZRR5 245 aa13.81□□□□□ -0.2
CTSD-206ENST00000497544 RPL39LQ96EH5 51 aaKnown RBP13.81□□□□□ -0.2
CTSD-206ENST00000497544 LINC00588Q9Y4M8 146 aa13.81□□□□□ -0.2
CTSD-206ENST00000497544 TGIF2-C20orf24A0A0A6YYL0 155 aa13.8□□□□□ -0.2
CTSD-206ENST00000497544 SMKR1H3BMG3 65 aa13.8□□□□□ -0.2
CTSD-206ENST00000497544 DAZ4Q86SG3 579 aaKnown RBP13.8□□□□□ -0.2
CTSD-206ENST00000497544 KRTAP4-5Q9BYR2 181 aa13.8□□□□□ -0.2
CTSD-206ENST00000497544 DAZ3Q9NR90 486 aaKnown RBP13.8□□□□□ -0.2
CTSD-206ENST00000497544 TRBV24-1A0A075B6N3 115 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 IGHV3-38A0A0C4DH36 116 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 GAS8-AS1O95177 125 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 NCR2O95944 276 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 PPBPP02775 128 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 TIRAPP58753 221 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 CBLN2Q8IUK8 224 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 GNB1LQ9BYB4 327 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 ST20Q9HBF5 79 aa13.79□□□□□ -0.2
CTSD-206ENST00000497544 D6R8Y8 96 aa13.78□□□□□ -0.2
CTSD-206ENST00000497544 HLA-DQA1P01909 254 aa13.78□□□□□ -0.2
CTSD-206ENST00000497544 S100A1P23297 94 aa13.78□□□□□ -0.2
CTSD-206ENST00000497544 MRPS16Q9Y3D3 137 aaKnown RBP13.78□□□□□ -0.2
CTSD-206ENST00000497544 PKHD1P08F94 4074 aa13.77□□□□□ -0.2
CTSD-206ENST00000497544 TRBV6-5A0A0K0K1A5 114 aa13.77□□□□□ -0.21
CTSD-206ENST00000497544 RPS10P46783 165 aaKnown RBP13.77□□□□□ -0.21
CTSD-206ENST00000497544 ORMDL3Q8N138 153 aa13.77□□□□□ -0.21
CTSD-206ENST00000497544 APCSP02743 223 aa13.76□□□□□ -0.21
CTSD-206ENST00000497544 TMEM97Q5BJF2 176 aa13.76□□□□□ -0.21
CTSD-206ENST00000497544 LELP1Q5T871 98 aa13.76□□□□□ -0.21
CTSD-206ENST00000497544 TRAV8-6A0A0B4J262 113 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 SDHAF1A6NFY7 115 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 ATP6V1G1O75348 118 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 MT-ND6P03923 174 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 PMCHP20382 165 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 NRACQ8N912 160 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 PRELID3AQ96N28 172 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 UPK3BQ9BT76 320 aa13.75□□□□□ -0.21
CTSD-206ENST00000497544 TNFRSF6BO95407 300 aa13.74□□□□□ -0.21
CTSD-206ENST00000497544 YPEL4Q96NS1 127 aa13.74□□□□□ -0.21
CTSD-206ENST00000497544 HERC1Q15751 4861 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 SUMO2P61956 95 aaKnown RBP13.73□□□□□ -0.21
CTSD-206ENST00000497544 FABP9Q0Z7S8 132 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 COTL1Q14019 142 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 KIAA1644Q3SXP7 199 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 C20orf78Q9BR46 151 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 MRPL18Q9H0U6 180 aaKnown RBP13.73□□□□□ -0.21
CTSD-206ENST00000497544 Q9H8V8 135 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 TRAPPC1Q9Y5R8 145 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 VPS13DQ5THJ4 4388 aa13.73□□□□□ -0.21
CTSD-206ENST00000497544 TRBV6-8A0A0A6YYG3 113 aa13.72□□□□□ -0.21
CTSD-206ENST00000497544 PHOX2AO14813 284 aa13.72□□□□□ -0.21
CTSD-206ENST00000497544 POLR2KP53803 58 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms