RNA–Protein interactions for RNA: ENST00000468653.5

SMC4-209, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 1,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-209ENST00000468653 VCYO14598 125 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 GAGE7O76087 117 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 GAGE12FP0CL80 117 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 GAGE12GP0CL81 117 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 GAGE12IP0CL82 117 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 POLR2KP53803 58 aaKnown RBP13.6□□□□□ -0.23
SMC4-209ENST00000468653 MAP1LC3CQ9BXW4 147 aa13.6□□□□□ -0.23
SMC4-209ENST00000468653 TRGV2A0A075B6R0 118 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 TRAV4A0A0B4J268 109 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 K7EMI3 77 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 ORMDL2Q53FV1 153 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 Q6ZSN1 163 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 NEGR1Q7Z3B1 354 aa13.59□□□□□ -0.23
SMC4-209ENST00000468653 NUDT3O95989 172 aa13.58□□□□□ -0.23
SMC4-209ENST00000468653 IGHV3-53P01767 116 aa13.58□□□□□ -0.23
SMC4-209ENST00000468653 ZNF479Q96JC4 524 aa13.58□□□□□ -0.23
SMC4-209ENST00000468653 MDFIQ99750 246 aa13.58□□□□□ -0.23
SMC4-209ENST00000468653 NACAE9PAV3 2078 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 P0DMU3 169 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 FAM231AP0DMU4 169 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 FAM231CP0DMU5 169 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 OR11H2Q8NH07 326 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 KIR2DL4Q99706 377 aa13.58□□□□□ -0.24
SMC4-209ENST00000468653 TNFRSF18Q9Y5U5 241 aa13.57□□□□□ -0.24
SMC4-209ENST00000468653 TRBV27A0A0K0K1C4 114 aa13.56□□□□□ -0.24
SMC4-209ENST00000468653 SYS1-DBNDD2H3BUS1 97 aa13.56□□□□□ -0.24
SMC4-209ENST00000468653 S100A12P80511 92 aa13.56□□□□□ -0.24
SMC4-209ENST00000468653 SAMD5Q5TGI4 173 aa13.56□□□□□ -0.24
SMC4-209ENST00000468653 Q8N976 141 aa13.56□□□□□ -0.24
SMC4-209ENST00000468653 A8MZ25 164 aa13.55□□□□□ -0.24
SMC4-209ENST00000468653 H0Y8G0 127 aa13.55□□□□□ -0.24
SMC4-209ENST00000468653 RNF183Q96D59 192 aa13.55□□□□□ -0.24
SMC4-209ENST00000468653 DEFB104AQ8WTQ1 72 aa13.54□□□□□ -0.24
SMC4-209ENST00000468653 IFI27L1Q96BM0 104 aa13.54□□□□□ -0.24
SMC4-209ENST00000468653 C18orf15Q96N68 181 aa13.54□□□□□ -0.24
SMC4-209ENST00000468653 CIDEAO60543 219 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 PET117Q6UWS5 81 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 NEXN-AS1Q8NBZ9 246 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 DNAJC30Q96LL9 226 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 C20orf202A1L168 122 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 I3L3M4 83 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 DEFB130BP0DP73 79 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 DEFB130AP0DP74 79 aa13.53□□□□□ -0.24
SMC4-209ENST00000468653 PKD1L1Q8TDX9 2849 aa13.52□□□□□ -0.24
SMC4-209ENST00000468653 IGHV4-28A0A0C4DH34 117 aa13.52□□□□□ -0.25
SMC4-209ENST00000468653 MIFP14174 115 aa13.52□□□□□ -0.25
SMC4-209ENST00000468653 G0S2P27469 103 aa13.52□□□□□ -0.25
SMC4-209ENST00000468653 SPATA12Q7Z6I5 190 aa13.52□□□□□ -0.25
SMC4-209ENST00000468653 Q9UF83 564 aa13.52□□□□□ -0.25
SMC4-209ENST00000468653 K7EQD1 137 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 ATP5LO75964 103 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 C2orf66Q6UXQ4 117 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 TEX43Q6ZNM6 134 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 TOMM6Q96B49 74 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 TRGV4A0A0C4DH28 118 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 LYRM9A8MSI8 78 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 DEFB4AO15263 64 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 FAM222AQ5U5X8 452 aa13.5□□□□□ -0.25
SMC4-209ENST00000468653 PCP4L1A6NKN8 68 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 TSHBP01222 138 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 LINC00612Q8N6U2 182 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 SLC25A29Q8N8R3 303 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 SCGB3A1Q96QR1 104 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 CYSLTR1Q9Y271 337 aa13.49□□□□□ -0.25
SMC4-209ENST00000468653 TRBV10-1A0A0K0K1A3 114 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 RHOHQ15669 191 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 Q8NAQ8 132 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 NBEAL2Q6ZNJ1 2754 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 PRSS1P07477 247 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 RPL36AP83881 106 aaKnown RBP13.48□□□□□ -0.25
SMC4-209ENST00000468653 LINC01545Q5VT33 79 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 ATOH7Q8N100 152 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 ZNRF2Q8NHG8 242 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 RPL36ALQ969Q0 106 aaKnown RBP13.48□□□□□ -0.25
SMC4-209ENST00000468653 VAMP8Q9BV40 100 aa13.48□□□□□ -0.25
SMC4-209ENST00000468653 CMYA5Q8N3K9 4069 aa13.47□□□□□ -0.25
SMC4-209ENST00000468653 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.47□□□□□ -0.25
SMC4-209ENST00000468653 TRBV7-3A0A075B6L6 115 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 TRBV6-4A0A1B0GX49 114 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 LINC01549A6NIU2 74 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 RIPPLY3P57055 190 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 FHL2Q14192 279 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 PMCHL2Q9BQD1 86 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 DKK2Q9UBU2 259 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 TP53TG1Q9Y2A0 90 aa13.46□□□□□ -0.25
SMC4-209ENST00000468653 ZNF664Q8N3J9 261 aa13.45□□□□□ -0.26
SMC4-209ENST00000468653 PHLDA1Q8WV24 401 aaPredicted RBP13.45□□□□□ -0.26
SMC4-209ENST00000468653 Q6ZN92 141 aa13.45□□□□□ -0.26
SMC4-209ENST00000468653 IGHV3-38A0A0C4DH36 116 aa13.44□□□□□ -0.26
SMC4-209ENST00000468653 RPL39P62891 51 aaKnown RBP13.44□□□□□ -0.26
SMC4-209ENST00000468653 LGALS9CQ6DKI2 356 aa13.44□□□□□ -0.26
SMC4-209ENST00000468653 ERASQ7Z444 233 aa13.44□□□□□ -0.26
SMC4-209ENST00000468653 PAM16Q9Y3D7 125 aa13.44□□□□□ -0.26
SMC4-209ENST00000468653 GAGE12JA6NER3 117 aa13.43□□□□□ -0.26
SMC4-209ENST00000468653 PRB2P02812 416 aaPredicted RBP13.43□□□□□ -0.26
SMC4-209ENST00000468653 ANK2Q01484 3957 aa13.43□□□□□ -0.26
SMC4-209ENST00000468653 GAGE1Q13065 139 aa13.43□□□□□ -0.26
SMC4-209ENST00000468653 GAGE4Q13068 117 aa13.43□□□□□ -0.26
SMC4-209ENST00000468653 GAGE5Q13069 117 aa13.43□□□□□ -0.26
SMC4-209ENST00000468653 COTL1Q14019 142 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 158 ms