RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 BRWD3Q6RI45 1802 aa2.98□□□□□ -1.93
CCDC88A-210ENST00000468534 THADAQ6YHU6 1953 aa2.98□□□□□ -1.93
CCDC88A-210ENST00000468534 ARID1AO14497 2285 aa2.98□□□□□ -1.93
CCDC88A-210ENST00000468534 TRPM6Q9BX84 2022 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 COL5A3P25940 1745 aaPredicted RBP2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 TRBV25-1A0A075B6N4 114 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 A0A096LNJ9 63 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 A0A1B0GU33 70 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 FAM168BA1KXE4 195 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 HMGN2P05204 90 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 MIFP14174 115 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 C6orf201Q7Z4U5 140 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 IMMP1LQ96LU5 166 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 CLTCQ00610 1675 aaKnown RBP2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 CTTNBP2Q8WZ74 1663 aa2.97□□□□□ -1.93
CCDC88A-210ENST00000468534 SNRNP200O75643 2136 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-210ENST00000468534 ITSN1Q15811 1721 aa2.96□□□□□ -1.93
CCDC88A-210ENST00000468534 XRN1Q8IZH2 1706 aaKnown RBP2.96□□□□□ -1.93
CCDC88A-210ENST00000468534 DOCK2Q92608 1830 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 ATRXP46100 2492 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 IGHV3-64A0A075B6Q5 118 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 FXYD6-FXYD2A0A087WZ82 144 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 IGKV3D-11A0A0A0MRZ8 115 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 TRAV10A0A0B4J240 114 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 A0A0D9SFI3 127 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 ODF3BA8MYP8 253 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 IQCF6A8MYZ5 107 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 DEFB116Q30KQ4 102 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 LYPD6Q86Y78 171 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 Q8TAT8 98 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 TMEM254Q8TBM7 123 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 FXYD6Q9H0Q3 95 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 C22orf24Q9Y442 160 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 HILPDAQ9Y5L2 63 aa2.96□□□□□ -1.94
CCDC88A-210ENST00000468534 UGGT1Q9NYU2 1555 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 COL4A6Q14031 1691 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 RGPD8O14715 1765 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 RGPD5Q99666 1765 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 ARFGEF2Q9Y6D5 1785 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 LRP5O75197 1615 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 IGLV3-16A0A075B6K0 115 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 MYMXA0A1B0GTQ4 84 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 SDHAF1A6NFY7 115 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 ERC2-IT1O76042 136 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 GCHFRP30047 84 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 NDPQ00604 133 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 DEFB113Q30KQ7 82 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 PYDC2Q56P42 97 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 ZNF818PQ6ZRF7 136 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 C20orf197Q8N268 126 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 LIMD2Q9BT23 127 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 LRP4O75096 1905 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 PTPRDP23468 1912 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 MROH2AA6NES4 1674 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 STRCP1A6NGW2 1772 aa2.95□□□□□ -1.94
CCDC88A-210ENST00000468534 HMGXB3Q12766 1538 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 IGLV2-18A0A075B6J9 118 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 TEX49A0A1B0GTD5 131 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 A0A1B0GWA3 101 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 FAM223BA6NKX1 122 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 TMEM14DPA8MWL7 114 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 TFF1P04155 84 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 COX6CP09669 75 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 EDDM3BP56851 147 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 LCE1CQ5T751 118 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 LCE1BQ5T7P3 118 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 KRTAP26-1Q6PEX3 210 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 ST20-AS1Q8NBB2 130 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 CFAP43Q8NDM7 1665 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 TDRD6O60522 2096 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 ANKRD12Q6UB98 2062 aa2.94□□□□□ -1.94
CCDC88A-210ENST00000468534 UBR1Q8IWV7 1749 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 LTBP2Q14767 1821 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 IGLV3-32A0A0A0MS00 114 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 TRBV6-6A0A0A6YYG2 114 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 TRAV12-3A0A0B4J271 114 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 LOC285095A0A1B0GVY8 99 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 F8WEM9 126 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 CHKB-CPT1BH3BT56 60 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 LINC00483Q53H64 154 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 C10orf128Q5T292 105 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 BAGE3Q86Y29 109 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 BAGE2Q86Y30 109 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 NDUFA11Q86Y39 141 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 KLF14Q8TD94 323 aaPredicted RBP2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 IFI27L1Q96BM0 104 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 ABCC6O95255 1503 aa2.93□□□□□ -1.94
CCDC88A-210ENST00000468534 MYOM1P52179 1685 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 BTAF1O14981 1849 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 TRAV23DV6A0A075B6W5 121 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 TMEM30CPA0ZSE6 113 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 IGLV1-47P01700 117 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 SFTA2Q6UW10 78 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 ZNF833PQ6ZTB9 187 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 CDC42SE2Q9NRR3 84 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 KLK12Q9UKR0 248 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 ARL2-SNX15V9GYD0 113 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 WDR90Q96KV7 1748 aa2.92□□□□□ -1.94
CCDC88A-210ENST00000468534 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 114.1 ms