RNA–Protein interactions for RNA: ENST00000467378.1

USP11-205, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 3

Gene USP11, Length 696 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-205ENST00000467378 GAGE1Q13065 139 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 GAGE4Q13068 117 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 GAGE5Q13069 117 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 GAGE13Q4V321 117 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 Q8N1X5 172 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 ZNRF2Q8NHG8 242 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 BORCS7Q96B45 105 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 ANAPC16Q96DE5 110 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 MRPS16Q9Y3D3 137 aaKnown RBP13.12□□□□□ -0.31
USP11-205ENST00000467378 HERC1Q15751 4861 aa13.12□□□□□ -0.31
USP11-205ENST00000467378 MT-ND4LP03901 98 aa13.11□□□□□ -0.31
USP11-205ENST00000467378 MGPP08493 103 aa13.11□□□□□ -0.31
USP11-205ENST00000467378 UPK3BQ9BT76 320 aa13.11□□□□□ -0.31
USP11-205ENST00000467378 Q6ZR54 194 aa13.1□□□□□ -0.31
USP11-205ENST00000467378 ATP6V0E2Q8NHE4 81 aa13.1□□□□□ -0.31
USP11-205ENST00000467378 TIRAPP58753 221 aa13.09□□□□□ -0.31
USP11-205ENST00000467378 RIGQ13278 110 aa13.09□□□□□ -0.31
USP11-205ENST00000467378 SUMO4Q6EEV6 95 aa13.09□□□□□ -0.31
USP11-205ENST00000467378 NEXN-AS1Q8NBZ9 246 aa13.09□□□□□ -0.31
USP11-205ENST00000467378 CARHSP1Q9Y2V2 147 aaKnown RBP13.09□□□□□ -0.31
USP11-205ENST00000467378 M0QY20 66 aa13.08□□□□□ -0.32
USP11-205ENST00000467378 C1orf134Q5TEV5 83 aa13.08□□□□□ -0.32
USP11-205ENST00000467378 SMIM15Q7Z3B0 74 aa13.08□□□□□ -0.32
USP11-205ENST00000467378 TRBV7-3A0A075B6L6 115 aa13.07□□□□□ -0.32
USP11-205ENST00000467378 RPL36AP83881 106 aaKnown RBP13.07□□□□□ -0.32
USP11-205ENST00000467378 RPL36ALQ969Q0 106 aaKnown RBP13.07□□□□□ -0.32
USP11-205ENST00000467378 TMEM191AQ9H0A3 160 aa13.07□□□□□ -0.32
USP11-205ENST00000467378 GTSF1LQ9H1H1 148 aa13.07□□□□□ -0.32
USP11-205ENST00000467378 Q9H8V8 135 aa13.07□□□□□ -0.32
USP11-205ENST00000467378 UBE2D3P61077 147 aa13.06□□□□□ -0.32
USP11-205ENST00000467378 UBE2D2P62837 147 aa13.06□□□□□ -0.32
USP11-205ENST00000467378 H7C1H1 209 aa13.05□□□□□ -0.32
USP11-205ENST00000467378 DMBT1Q9UGM3 2413 aaPredicted RBP13.05□□□□□ -0.32
USP11-205ENST00000467378 RASL11AQ6T310 242 aa13.04□□□□□ -0.32
USP11-205ENST00000467378 GATD1Q8NB37 220 aa13.04□□□□□ -0.32
USP11-205ENST00000467378 DNAJC30Q96LL9 226 aa13.04□□□□□ -0.32
USP11-205ENST00000467378 CTDSP1Q9GZU7 261 aa13.04□□□□□ -0.32
USP11-205ENST00000467378 A0A1B0GW15 77 aa13.03□□□□□ -0.32
USP11-205ENST00000467378 RAB4AP20338 218 aa13.03□□□□□ -0.32
USP11-205ENST00000467378 RNF185Q96GF1 192 aa13.03□□□□□ -0.32
USP11-205ENST00000467378 NIT2Q9NQR4 276 aa13.03□□□□□ -0.32
USP11-205ENST00000467378 TRAV26-2A0A0B4J265 109 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 A0A1B0GXF2 115 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 SIVA1O15304 175 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 CAMPP49913 170 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 TNP2Q05952 138 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 LELP1Q5T871 98 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 MRPL54Q6P161 138 aaKnown RBP13.02□□□□□ -0.33
USP11-205ENST00000467378 WFDC10BQ8IUB3 73 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 CLRN3Q8NCR9 226 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 FRZBQ92765 325 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 IMMP2LQ96T52 175 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 TNFRSF18Q9Y5U5 241 aa13.02□□□□□ -0.33
USP11-205ENST00000467378 C7orf77A4D0Y5 90 aa13.01□□□□□ -0.33
USP11-205ENST00000467378 AMN1Q8IY45 258 aa13.01□□□□□ -0.33
USP11-205ENST00000467378 LRP1BQ9NZR2 4599 aa13□□□□□ -0.33
USP11-205ENST00000467378 NBDYA0A0U1RRE5 68 aa13□□□□□ -0.33
USP11-205ENST00000467378 HBBP68871 147 aa13□□□□□ -0.33
USP11-205ENST00000467378 ATP5L2Q7Z4Y8 100 aa13□□□□□ -0.33
USP11-205ENST00000467378 SLC7A5P1Q8MH63 180 aa13□□□□□ -0.33
USP11-205ENST00000467378 TMEM242Q9NWH2 141 aa13□□□□□ -0.33
USP11-205ENST00000467378 IGHV3-38A0A0C4DH36 116 aa12.99□□□□□ -0.33
USP11-205ENST00000467378 APOC3P02656 99 aa12.99□□□□□ -0.33
USP11-205ENST00000467378 OR10J3Q5JRS4 329 aa12.99□□□□□ -0.33
USP11-205ENST00000467378 FAM104BQ5XKR9 115 aa12.99□□□□□ -0.33
USP11-205ENST00000467378 DAZ4Q86SG3 579 aaKnown RBP12.99□□□□□ -0.33
USP11-205ENST00000467378 RPL39LQ96EH5 51 aaKnown RBP12.99□□□□□ -0.33
USP11-205ENST00000467378 DAZ3Q9NR90 486 aaKnown RBP12.99□□□□□ -0.33
USP11-205ENST00000467378 APOBP04114 4563 aaKnown RBP12.99□□□□□ -0.33
USP11-205ENST00000467378 A0A087WWC5 75 aa12.98□□□□□ -0.33
USP11-205ENST00000467378 TRAV8-6A0A0B4J262 113 aa12.98□□□□□ -0.33
USP11-205ENST00000467378 GAS8-AS1O95177 125 aa12.98□□□□□ -0.33
USP11-205ENST00000467378 S100A8P05109 93 aa12.98□□□□□ -0.33
USP11-205ENST00000467378 RHEBQ15382 184 aa12.98□□□□□ -0.33
USP11-205ENST00000467378 DNAH10OSP0CZ25 163 aa12.97□□□□□ -0.33
USP11-205ENST00000467378 MRAP2Q96G30 205 aa12.97□□□□□ -0.33
USP11-205ENST00000467378 BTF3L4Q96K17 158 aa12.97□□□□□ -0.33
USP11-205ENST00000467378 KRTAP1-5Q9BYS1 174 aa12.97□□□□□ -0.33
USP11-205ENST00000467378 NDUFA5Q16718 116 aa12.96□□□□□ -0.33
USP11-205ENST00000467378 MRPL51Q4U2R6 128 aaKnown RBP12.96□□□□□ -0.33
USP11-205ENST00000467378 NTM-AS1Q6ZSK4 140 aa12.96□□□□□ -0.33
USP11-205ENST00000467378 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.96□□□□□ -0.33
USP11-205ENST00000467378 RPS10P5Q9NQ39 176 aa12.96□□□□□ -0.33
USP11-205ENST00000467378 TRBV6-8A0A0A6YYG3 113 aa12.95□□□□□ -0.34
USP11-205ENST00000467378 TRBV6-5A0A0K0K1A5 114 aa12.95□□□□□ -0.34
USP11-205ENST00000467378 KCNIP4Q6PIL6 250 aa12.95□□□□□ -0.34
USP11-205ENST00000467378 SVBPQ8N300 66 aa12.95□□□□□ -0.34
USP11-205ENST00000467378 SMKR1H3BMG3 65 aa12.94□□□□□ -0.34
USP11-205ENST00000467378 SNAPINO95295 136 aa12.94□□□□□ -0.34
USP11-205ENST00000467378 RPS10P46783 165 aaKnown RBP12.94□□□□□ -0.34
USP11-205ENST00000467378 TMEM97Q5BJF2 176 aa12.94□□□□□ -0.34
USP11-205ENST00000467378 TTC32Q5I0X7 151 aa12.94□□□□□ -0.34
USP11-205ENST00000467378 TRAV9-1A0A075B6T8 112 aa12.93□□□□□ -0.34
USP11-205ENST00000467378 LINC01556Q5JQF7 62 aa12.93□□□□□ -0.34
USP11-205ENST00000467378 EPM2AB3EWF7 344 aa12.92□□□□□ -0.34
USP11-205ENST00000467378 NCR2O95944 276 aa12.92□□□□□ -0.34
USP11-205ENST00000467378 INAFM2P0DMQ5 153 aa12.92□□□□□ -0.34
USP11-205ENST00000467378 NRACQ8N912 160 aa12.92□□□□□ -0.34
USP11-205ENST00000467378 TRAV9-2A0A087WT02 112 aa12.91□□□□□ -0.34
USP11-205ENST00000467378 SDHAF1A6NFY7 115 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms