RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 WDR73Q6P4I2 378 aa15.37■□□□□ 0.05
PTPN4-208ENST00000460289 RPP21Q9H633 154 aaKnown RBP15.37■□□□□ 0.05
PTPN4-208ENST00000460289 TRBV6-8A0A0A6YYG3 113 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 LRCOL1A6NCL2 159 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 H7C1H1 209 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 K7EN84 100 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 TRGC1P0CF51 173 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 ELOBQ15370 118 aa15.36■□□□□ 0.05
PTPN4-208ENST00000460289 EIF5A2Q9GZV4 153 aaKnown RBP15.36■□□□□ 0.05
PTPN4-208ENST00000460289 NTF3P20783 257 aa15.35■□□□□ 0.05
PTPN4-208ENST00000460289 TMEM97Q5BJF2 176 aa15.35■□□□□ 0.05
PTPN4-208ENST00000460289 RNASE7Q9H1E1 156 aaKnown RBP15.35■□□□□ 0.05
PTPN4-208ENST00000460289 COX11Q9Y6N1 276 aa15.35■□□□□ 0.05
PTPN4-208ENST00000460289 DNAH5Q8TE73 4624 aa15.34■□□□□ 0.05
PTPN4-208ENST00000460289 NDUFS6O75380 124 aaKnown RBP15.34■□□□□ 0.05
PTPN4-208ENST00000460289 MGPP08493 103 aa15.34■□□□□ 0.05
PTPN4-208ENST00000460289 DNAJC30Q96LL9 226 aa15.34■□□□□ 0.05
PTPN4-208ENST00000460289 TMEM262E9PQX1 116 aa15.33■□□□□ 0.04
PTPN4-208ENST00000460289 FUSP35637 526 aaKnown RBP eCLIP15.33■□□□□ 0.04
PTPN4-208ENST00000460289 CTRLP40313 264 aa15.33■□□□□ 0.04
PTPN4-208ENST00000460289 CEBPGP53567 150 aa15.33■□□□□ 0.04
PTPN4-208ENST00000460289 RMI2Q96E14 147 aa15.33■□□□□ 0.04
PTPN4-208ENST00000460289 M0QY20 66 aa15.32■□□□□ 0.04
PTPN4-208ENST00000460289 NTN5Q8WTR8 489 aaPredicted RBP15.32■□□□□ 0.04
PTPN4-208ENST00000460289 FAM210AQ96ND0 272 aa15.32■□□□□ 0.04
PTPN4-208ENST00000460289 DPH3P1Q9H4G8 78 aa15.32■□□□□ 0.04
PTPN4-208ENST00000460289 KLK12Q9UKR0 248 aa15.32■□□□□ 0.04
PTPN4-208ENST00000460289 PKIAP61925 76 aa15.31■□□□□ 0.04
PTPN4-208ENST00000460289 FAM231DQ6ZW35 169 aa15.31■□□□□ 0.04
PTPN4-208ENST00000460289 MAPKAPK5-AS1Q8N8E1 139 aa15.31■□□□□ 0.04
PTPN4-208ENST00000460289 CNFNQ9BYD5 112 aa15.31■□□□□ 0.04
PTPN4-208ENST00000460289 HSPG2P98160 4391 aa15.3■□□□□ 0.04
PTPN4-208ENST00000460289 PCLOQ9Y6V0 5065 aa15.3■□□□□ 0.04
PTPN4-208ENST00000460289 GATCO43716 136 aaKnown RBP15.3■□□□□ 0.04
PTPN4-208ENST00000460289 TWIST1Q15672 202 aa15.3■□□□□ 0.04
PTPN4-208ENST00000460289 SUMO4Q6EEV6 95 aa15.3■□□□□ 0.04
PTPN4-208ENST00000460289 Q8N814 137 aa15.3■□□□□ 0.04
PTPN4-208ENST00000460289 GCSHP23434 173 aa15.29■□□□□ 0.04
PTPN4-208ENST00000460289 CHCHD5Q9BSY4 110 aa15.29■□□□□ 0.04
PTPN4-208ENST00000460289 IGLV5-52A0A0A0MRZ9 124 aa15.28■□□□□ 0.04
PTPN4-208ENST00000460289 Q0VG73 95 aa15.28■□□□□ 0.04
PTPN4-208ENST00000460289 RASL11AQ6T310 242 aa15.28■□□□□ 0.04
PTPN4-208ENST00000460289 UBE2WQ96B02 151 aa15.28■□□□□ 0.04
PTPN4-208ENST00000460289 SMIM7Q9BQ49 75 aa15.28■□□□□ 0.04
PTPN4-208ENST00000460289 A8MWL6 223 aa15.27■□□□□ 0.04
PTPN4-208ENST00000460289 NTM-AS1Q6ZSK4 140 aa15.27■□□□□ 0.04
PTPN4-208ENST00000460289 APOBP04114 4563 aaKnown RBP15.27■□□□□ 0.03
PTPN4-208ENST00000460289 TRBV25-1A0A075B6N4 114 aa15.26■□□□□ 0.03
PTPN4-208ENST00000460289 IGKV2D-24A0A075B6R9 120 aa15.26■□□□□ 0.03
PTPN4-208ENST00000460289 GTSF1Q8WW33 167 aa15.26■□□□□ 0.03
PTPN4-208ENST00000460289 KRTAP17-1Q9BYP8 105 aa15.26■□□□□ 0.03
PTPN4-208ENST00000460289 NIT2Q9NQR4 276 aa15.26■□□□□ 0.03
PTPN4-208ENST00000460289 ZNF727A8MUV8 499 aa15.25■□□□□ 0.03
PTPN4-208ENST00000460289 SRP19P09132 144 aaKnown RBP15.25■□□□□ 0.03
PTPN4-208ENST00000460289 KRTAP10-1P60331 282 aa15.25■□□□□ 0.03
PTPN4-208ENST00000460289 CT83Q5H943 113 aa15.25■□□□□ 0.03
PTPN4-208ENST00000460289 SMIM15Q7Z3B0 74 aa15.25■□□□□ 0.03
PTPN4-208ENST00000460289 MPV17L2Q567V2 206 aa15.24■□□□□ 0.03
PTPN4-208ENST00000460289 LINC01551Q86U37 167 aa15.24■□□□□ 0.03
PTPN4-208ENST00000460289 Q8N1X5 172 aa15.24■□□□□ 0.03
PTPN4-208ENST00000460289 FRZBQ92765 325 aa15.24■□□□□ 0.03
PTPN4-208ENST00000460289 IGHV1-24A0A0C4DH33 117 aa15.23■□□□□ 0.03
PTPN4-208ENST00000460289 CRPP02741 224 aa15.23■□□□□ 0.03
PTPN4-208ENST00000460289 FOXA3P55318 350 aaPredicted RBP15.23■□□□□ 0.03
PTPN4-208ENST00000460289 IQCJQ1A5X6 159 aa15.23■□□□□ 0.03
PTPN4-208ENST00000460289 ATRAIDQ6UW56 229 aa15.23■□□□□ 0.03
PTPN4-208ENST00000460289 C15orf54Q8N8G6 183 aa15.23■□□□□ 0.03
PTPN4-208ENST00000460289 ANGP03950 147 aaKnown RBP15.22■□□□□ 0.03
PTPN4-208ENST00000460289 TEX261Q6UWH6 196 aa15.22■□□□□ 0.03
PTPN4-208ENST00000460289 WFDC2Q14508 124 aa15.21■□□□□ 0.03
PTPN4-208ENST00000460289 BAALCQ8WXS3 180 aa15.21■□□□□ 0.03
PTPN4-208ENST00000460289 BORCS7Q96B45 105 aa15.21■□□□□ 0.03
PTPN4-208ENST00000460289 PGLYRP4Q96LB8 373 aa15.21■□□□□ 0.03
PTPN4-208ENST00000460289 KRTAP4-5Q9BYR2 181 aa15.21■□□□□ 0.03
PTPN4-208ENST00000460289 LECT2O14960 151 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 GAGE6Q13070 117 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 FAM74A3Q4VXF1 159 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 ENHOQ6UWT2 76 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 Q8N976 141 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 C1orf43Q9BWL3 253 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 OSTCQ9NRP0 149 aa15.2■□□□□ 0.02
PTPN4-208ENST00000460289 XGP55808 180 aa15.19■□□□□ 0.02
PTPN4-208ENST00000460289 RBX1P62877 108 aa15.19■□□□□ 0.02
PTPN4-208ENST00000460289 TSKUQ8WUA8 353 aa15.19■□□□□ 0.02
PTPN4-208ENST00000460289 GFRA4Q9GZZ7 299 aa15.19■□□□□ 0.02
PTPN4-208ENST00000460289 FAM231BA6NCW3 169 aa15.18■□□□□ 0.02
PTPN4-208ENST00000460289 MIAQ16674 131 aa15.18■□□□□ 0.02
PTPN4-208ENST00000460289 TMEM241Q24JQ0 296 aa15.18■□□□□ 0.02
PTPN4-208ENST00000460289 GATD1Q8NB37 220 aa15.18■□□□□ 0.02
PTPN4-208ENST00000460289 PEA15Q15121 130 aa15.17■□□□□ 0.02
PTPN4-208ENST00000460289 TMEM243Q9BU79 118 aa15.17■□□□□ 0.02
PTPN4-208ENST00000460289 ABCA13Q86UQ4 5058 aa15.16■□□□□ 0.02
PTPN4-208ENST00000460289 TRAV26-2A0A0B4J265 109 aa15.16■□□□□ 0.02
PTPN4-208ENST00000460289 COTL1Q14019 142 aa15.16■□□□□ 0.02
PTPN4-208ENST00000460289 TMEM70Q9BUB7 260 aa15.16■□□□□ 0.02
PTPN4-208ENST00000460289 SMDT1Q9H4I9 107 aa15.16■□□□□ 0.02
PTPN4-208ENST00000460289 HIGD1CA8MV81 97 aa15.15■□□□□ 0.02
PTPN4-208ENST00000460289 PRR34Q9NV39 138 aa15.15■□□□□ 0.02
PTPN4-208ENST00000460289 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.14■□□□□ 0.01
PTPN4-208ENST00000460289 A0A1B0GUT8 65 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms