RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 SPRY2O43597 315 aa10.58□□□□□ -0.72
LIMD1-202ENST00000440097 SMCPP49901 116 aaPredicted RBP10.58□□□□□ -0.72
LIMD1-202ENST00000440097 Q6ZSV7 163 aa10.58□□□□□ -0.72
LIMD1-202ENST00000440097 C1QTNF4Q9BXJ3 329 aa10.58□□□□□ -0.72
LIMD1-202ENST00000440097 CDIP1Q9H305 208 aa10.58□□□□□ -0.72
LIMD1-202ENST00000440097 MRPL16Q9NX20 251 aaKnown RBP10.58□□□□□ -0.72
LIMD1-202ENST00000440097 PGPEP1Q9NXJ5 209 aa10.58□□□□□ -0.72
LIMD1-202ENST00000440097 NOTCH3Q9UM47 2321 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 A0A1W2PRX2 142 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 LGALS9O00182 355 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 TMEM86BQ8N661 226 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 RNF152Q8N8N0 203 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 OR11H12B2RN74 326 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 LINC01619G3V211 115 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 ANXA2RQ3ZCQ2 193 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 OR11H2Q8NH07 326 aa10.57□□□□□ -0.72
LIMD1-202ENST00000440097 NFE4Q86UQ8 179 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 ESM1Q9NQ30 184 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 MAST4O15021 2626 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 H7C1H1 209 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 ASIPP42127 132 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 CFAP126Q5VTH2 177 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 SFTA2Q6UW10 78 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 PHLDA3Q9Y5J5 127 aa10.56□□□□□ -0.72
LIMD1-202ENST00000440097 F8VRH5 84 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 SPINK8P0C7L1 97 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 TRAV12-3A0A0B4J271 114 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 MT-ATP8P03928 68 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 FHL3Q13643 280 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 C4orf3Q8WVX3 66 aa10.55□□□□□ -0.72
LIMD1-202ENST00000440097 K7EQG2 157 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 GNRH2O43555 120 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 FAM159AQ6UWV7 190 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 ZNF418Q8TF45 676 aaPredicted RBP10.54□□□□□ -0.72
LIMD1-202ENST00000440097 DLX4Q92988 240 aaPredicted RBP10.54□□□□□ -0.72
LIMD1-202ENST00000440097 TRAV12-2A0A075B6T6 113 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 PSMB2P49721 201 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 KRTAP1-1Q07627 177 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 ATP6V0E2Q8NHE4 81 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 PEMTQ9UBM1 199 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 ATRQ13535 2644 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 LINC01549A6NIU2 74 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 DYNLRB2Q8TF09 96 aa10.54□□□□□ -0.72
LIMD1-202ENST00000440097 TRAV12-1A0A0B4J245 112 aa10.53□□□□□ -0.72
LIMD1-202ENST00000440097 PTH2Q96A98 100 aa10.53□□□□□ -0.72
LIMD1-202ENST00000440097 ANK3Q12955 4377 aaKnown RBP10.53□□□□□ -0.72
LIMD1-202ENST00000440097 LOC107984156A0A0G2JMH3 177 aa10.53□□□□□ -0.72
LIMD1-202ENST00000440097 ARL17AQ8IVW1 177 aa10.53□□□□□ -0.72
LIMD1-202ENST00000440097 FAM19A4Q96LR4 140 aa10.53□□□□□ -0.72
LIMD1-202ENST00000440097 XGP55808 180 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 SPINK13Q1W4C9 94 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 ZFP2Q6ZN57 461 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 SCGB3A1Q96QR1 104 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 A0A0J9YX75 114 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 Q6ZUT4 128 aa10.52□□□□□ -0.73
LIMD1-202ENST00000440097 TRBV7-9A0A0J9YWB2 115 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 TSPAN13O95857 204 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 CD7P09564 240 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 PRADC1Q9BSG0 188 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 SMIM2Q9BVW6 85 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 KLLNB2CW77 178 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 PLEKHB2Q96CS7 222 aa10.51□□□□□ -0.73
LIMD1-202ENST00000440097 ZNF815PA8K554 130 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 C14orf178Q8N769 122 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-202ENST00000440097 NEXN-AS1Q8NBZ9 246 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 CARD19Q96LW7 228 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 NSD1Q96L73 2696 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-202ENST00000440097 MGPP08493 103 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 DEFB131AP59861 70 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 SCGB1D4Q6XE38 83 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 TMEM61Q8N0U2 210 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 C2CD3Q4AC94 2353 aa10.5□□□□□ -0.73
LIMD1-202ENST00000440097 SRSF9Q13242 221 aaKnown RBP eCLIP10.49□□□□□ -0.73
LIMD1-202ENST00000440097 KNCNA6PVL3 124 aa10.49□□□□□ -0.73
LIMD1-202ENST00000440097 CD28P10747 220 aa10.49□□□□□ -0.73
LIMD1-202ENST00000440097 UBE2D1P51668 147 aa10.49□□□□□ -0.73
LIMD1-202ENST00000440097 APRG1Q8IVJ8 170 aa10.49□□□□□ -0.73
LIMD1-202ENST00000440097 TOMM6Q96B49 74 aa10.49□□□□□ -0.73
LIMD1-202ENST00000440097 HTN1P15515 57 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 DUSP14O95147 198 aaKnown RBP10.48□□□□□ -0.73
LIMD1-202ENST00000440097 IGHV4-4A0A075B6R2 117 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 PRSS29PA6NIE9 313 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 RNASE3P12724 160 aaKnown RBP10.48□□□□□ -0.73
LIMD1-202ENST00000440097 UBE2D3P61077 147 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 UBE2D2P62837 147 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 ORMDL2Q53FV1 153 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 BAALCQ8WXS3 180 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 RNF183Q96D59 192 aa10.48□□□□□ -0.73
LIMD1-202ENST00000440097 CITED2Q99967 270 aaPredicted RBP10.48□□□□□ -0.73
LIMD1-202ENST00000440097 RAX2Q96IS3 184 aa10.47□□□□□ -0.73
LIMD1-202ENST00000440097 LINC01006Q8NI28 216 aa10.47□□□□□ -0.73
LIMD1-202ENST00000440097 RASL10AQ92737 203 aa10.47□□□□□ -0.73
LIMD1-202ENST00000440097 CCL24O00175 119 aa10.46□□□□□ -0.73
LIMD1-202ENST00000440097 RNASE1P07998 156 aaKnown RBP10.46□□□□□ -0.73
LIMD1-202ENST00000440097 SUMO2P61956 95 aaKnown RBP10.46□□□□□ -0.73
LIMD1-202ENST00000440097 TEN1Q86WV5 123 aa10.46□□□□□ -0.73
LIMD1-202ENST00000440097 RPL39LQ96EH5 51 aaKnown RBP10.46□□□□□ -0.73
LIMD1-202ENST00000440097 DPH3P1Q9H4G8 78 aa10.46□□□□□ -0.73
LIMD1-202ENST00000440097 TCL1BO95988 128 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms