RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 ADAMTSL5Q6ZMM2 481 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 MAPKAPK5-AS1Q8N8E1 139 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 RNF183Q96D59 192 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 B5MCH6 92 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 GCSHP23434 173 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 GAGE5Q13069 117 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 GAGE6Q13070 117 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 MRPL53Q96EL3 112 aaKnown RBP7.05□□□□□ -1.28
CUX1-206ENST00000437600 RAX2Q96IS3 184 aa7.05□□□□□ -1.28
CUX1-206ENST00000437600 PKD1L1Q8TDX9 2849 aa7.04□□□□□ -1.28
CUX1-206ENST00000437600 KNCNA6PVL3 124 aa7.04□□□□□ -1.28
CUX1-206ENST00000437600 K7ERJ3 54 aa7.04□□□□□ -1.28
CUX1-206ENST00000437600 IGKCP01834 107 aa7.04□□□□□ -1.28
CUX1-206ENST00000437600 SUMO2P61956 95 aaKnown RBP7.04□□□□□ -1.28
CUX1-206ENST00000437600 RPL39P62891 51 aaKnown RBP7.04□□□□□ -1.28
CUX1-206ENST00000437600 CD300EQ496F6 205 aaPredicted RBP7.04□□□□□ -1.28
CUX1-206ENST00000437600 OR9G4Q8NGQ1 327 aa7.04□□□□□ -1.28
CUX1-206ENST00000437600 SMIM13P0DJ93 91 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 Q6ZSV7 163 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 SCGB3A1Q96QR1 104 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 SMIM2Q9BVW6 85 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 ZNF256Q9Y2P7 627 aaPredicted RBP7.03□□□□□ -1.28
CUX1-206ENST00000437600 Q8N1Y9 231 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 OPRPNQ99935 248 aaPredicted RBP7.03□□□□□ -1.28
CUX1-206ENST00000437600 MRPL16Q9NX20 251 aaKnown RBP7.03□□□□□ -1.28
CUX1-206ENST00000437600 Q9UF83 564 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 LGALS1P09382 135 aaKnown RBP7.03□□□□□ -1.28
CUX1-206ENST00000437600 DPH3P1Q9H4G8 78 aa7.03□□□□□ -1.28
CUX1-206ENST00000437600 WIPF1O43516 503 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 FXYD2P54710 66 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 PROK1P58294 105 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 WFDC2Q14508 124 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 KLHL30-AS1Q8NEE0 82 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 FAM19A4Q96LR4 140 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 IGHV4-4A0A075B6R2 117 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.02□□□□□ -1.29
CUX1-206ENST00000437600 DUSP14O95147 198 aaKnown RBP7.02□□□□□ -1.29
CUX1-206ENST00000437600 C2orf66Q6UXQ4 117 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 APRG1Q8IVJ8 170 aa7.02□□□□□ -1.29
CUX1-206ENST00000437600 DPM2O94777 84 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 ELANEP08246 267 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 SH2D6Q7Z4S9 175 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 UBE2E2Q96LR5 201 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 PPDPFQ9H3Y8 114 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 ERG28Q9UKR5 140 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 KLLNB2CW77 178 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 J3QR89 54 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 P0DMU3 169 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 FAM231AP0DMU4 169 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 FAM231CP0DMU5 169 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 LINC00315P59091 139 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 DEFB131AP59861 70 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 LENEPQ9Y5L5 61 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 TRBV25-1A0A075B6N4 114 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 A0A0J9YX75 114 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 SNRPD3P62318 126 aaKnown RBP7.01□□□□□ -1.29
CUX1-206ENST00000437600 ETDBQ3ZM63 59 aa7.01□□□□□ -1.29
CUX1-206ENST00000437600 SPANXB1Q9NS25 103 aaPredicted RBP7.01□□□□□ -1.29
CUX1-206ENST00000437600 NHP2Q9NX24 153 aaKnown RBP7.01□□□□□ -1.29
CUX1-206ENST00000437600 RBMY1A1P0DJD3 496 aaKnown RBP7□□□□□ -1.29
CUX1-206ENST00000437600 RBMY1CP0DJD4 496 aa7□□□□□ -1.29
CUX1-206ENST00000437600 RBMY1FQ15415 496 aaKnown RBP7□□□□□ -1.29
CUX1-206ENST00000437600 SUMO4Q6EEV6 95 aa7□□□□□ -1.29
CUX1-206ENST00000437600 PTH2Q96A98 100 aa7□□□□□ -1.29
CUX1-206ENST00000437600 PRSS29PA6NIE9 313 aa7□□□□□ -1.29
CUX1-206ENST00000437600 ZNF56Q15929 161 aa7□□□□□ -1.29
CUX1-206ENST00000437600 DLX4Q92988 240 aaPredicted RBP7□□□□□ -1.29
CUX1-206ENST00000437600 SPATA25Q9BR10 227 aa7□□□□□ -1.29
CUX1-206ENST00000437600 ZNF580Q9UK33 172 aa7□□□□□ -1.29
CUX1-206ENST00000437600 K7EMT4 169 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 K7EQG2 157 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 ZNF876PQ49A33 203 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 ZNF418Q8TF45 676 aaPredicted RBP6.99□□□□□ -1.29
CUX1-206ENST00000437600 SPAG8Q99932 426 aaPredicted RBP6.99□□□□□ -1.29
CUX1-206ENST00000437600 ZMAT4Q9H898 229 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 CSDC2Q9Y534 153 aaKnown RBP6.99□□□□□ -1.29
CUX1-206ENST00000437600 KIF25-AS1Q9Y6Z4 181 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 A0A087WX48 190 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 H3BMG7 143 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 ATP5LO75964 103 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 CD28P10747 220 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 SFTA2Q6UW10 78 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 AMTNQ6UX39 209 aa6.99□□□□□ -1.29
CUX1-206ENST00000437600 IGHV3OR16-12A0A075B7B8 117 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 SDHAF1A6NFY7 115 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 LINC01546A6NGU7 62 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 TMEM61Q8N0U2 210 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 TP53TG1Q9Y2A0 90 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 INSL3P51460 131 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 BAALCQ8WXS3 180 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 CHAC1Q9BUX1 264 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 IGHV3-64A0A075B6Q5 118 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 FOXI2Q6ZQN5 318 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 CYSLTR1Q9Y271 337 aa6.98□□□□□ -1.29
CUX1-206ENST00000437600 IGHV3-16A0A0C4DH30 117 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 TSHBP01222 138 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 RNASE13Q5GAN3 156 aaKnown RBP6.97□□□□□ -1.29
CUX1-206ENST00000437600 F8W1H4 67 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 LINC01619G3V211 115 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 CEMP1Q6PRD7 247 aaPredicted RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms