RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 TRPT1Q86TN4 253 aaKnown RBP8.71□□□□□ -1.02
CD44-209ENST00000433892 BEX4Q9NWD9 120 aaPredicted RBP8.71□□□□□ -1.02
CD44-209ENST00000433892 NAV2Q8IVL1 2488 aa8.71□□□□□ -1.02
CD44-209ENST00000433892 KNCNA6PVL3 124 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 J3QLI3 93 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 RBMY1A1P0DJD3 496 aaKnown RBP8.7□□□□□ -1.02
CD44-209ENST00000433892 RBMY1CP0DJD4 496 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 RBMY1FQ15415 496 aaKnown RBP8.7□□□□□ -1.02
CD44-209ENST00000433892 DEFB136Q30KP8 78 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 ETDBQ3ZM63 59 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 GAGE13Q4V321 117 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 TCTEX1D4Q5JR98 221 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 ZNF702PQ9H963 129 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 SPANXB1Q9NS25 103 aaPredicted RBP8.7□□□□□ -1.02
CD44-209ENST00000433892 APOMO95445 188 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 ELANEP08246 267 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 UBE2D1P51668 147 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 NSUN5P1Q3KNT7 163 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 C18orf65Q6ZTR6 163 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 UBE2E2Q96LR5 201 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 AKAP9Q99996 3911 aa8.7□□□□□ -1.02
CD44-209ENST00000433892 IGHV3-73A0A0B4J1V6 119 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 PRM2P04554 102 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 SLURP1P55000 103 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 RHOHQ15669 191 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 Q6YL49 198 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 C20orf203Q8NBC4 194 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 PRO0461Q9UI25 63 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 TLN2Q9Y4G6 2542 aa8.69□□□□□ -1.02
CD44-209ENST00000433892 CHD6Q8TD26 2715 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 TRGV11A0A075B6L2 103 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 LOC107984156A0A0G2JMH3 177 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 I3L3M4 83 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 J3QQQ9 107 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 TSPAN13O95857 204 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 DEFB131AP59861 70 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 ARL17AQ8IVW1 177 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 AMELXQ99217 191 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 UBR5O95071 2799 aaPredicted RBP8.68□□□□□ -1.02
CD44-209ENST00000433892 NF1P21359 2839 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 PROK1P58294 105 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 SLC25A29Q8N8R3 303 aa8.68□□□□□ -1.02
CD44-209ENST00000433892 USP24Q9UPU5 2620 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 IGHV3-64A0A075B6Q5 118 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 IGHV3-30P01768 117 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 PRB1P04280 392 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 IGHV3-30-5P0DP03 117 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 LGALS3P17931 250 aaKnown RBP8.67□□□□□ -1.02
CD44-209ENST00000433892 NFE4Q86UQ8 179 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 EPG5Q9HCE0 2579 aa8.67□□□□□ -1.02
CD44-209ENST00000433892 NDUFA11Q86Y39 141 aa8.66□□□□□ -1.02
CD44-209ENST00000433892 DUX3Q96PT4 197 aa8.66□□□□□ -1.02
CD44-209ENST00000433892 IGHV4-31P0DP07 118 aa8.66□□□□□ -1.02
CD44-209ENST00000433892 RNF152Q8N8N0 203 aa8.66□□□□□ -1.02
CD44-209ENST00000433892 VCX2Q9H322 139 aa8.66□□□□□ -1.02
CD44-209ENST00000433892 NIPBLQ6KC79 2804 aaeCLIP8.66□□□□□ -1.02
CD44-209ENST00000433892 IGLV4-3A0A075B6K6 122 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 A0A0J9YXV3 536 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 TMEM223A0PJW6 202 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 FSHBP01225 129 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 CFC1BP0CG36 223 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 CFC1P0CG37 223 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 PSMB2P49721 201 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 INSL3P51460 131 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 HIST2H2BDQ6DRA6 164 aa8.65□□□□□ -1.02
CD44-209ENST00000433892 DLX4Q92988 240 aaPredicted RBP8.65□□□□□ -1.02
CD44-209ENST00000433892 SPAG8Q99932 426 aaPredicted RBP8.65□□□□□ -1.02
CD44-209ENST00000433892 TSSC4Q9Y5U2 329 aaPredicted RBP8.65□□□□□ -1.02
CD44-209ENST00000433892 RBMY1BA6NDE4 496 aaKnown RBP8.65□□□□□ -1.03
CD44-209ENST00000433892 RBMY1EA6NEQ0 496 aaKnown RBP8.65□□□□□ -1.03
CD44-209ENST00000433892 H3BMM0 161 aa8.65□□□□□ -1.03
CD44-209ENST00000433892 RBMY1DP0C7P1 496 aaKnown RBP8.65□□□□□ -1.03
CD44-209ENST00000433892 ZNF22P17026 224 aaPredicted RBP8.65□□□□□ -1.03
CD44-209ENST00000433892 Q9UF83 564 aa8.65□□□□□ -1.03
CD44-209ENST00000433892 J3QR89 54 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 RHODO00212 210 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 NBPF19A0A087WUL8 3843 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 LEPROTO15243 131 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 KRTAP10-9P60411 292 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 CEMP1Q6PRD7 247 aaPredicted RBP8.64□□□□□ -1.03
CD44-209ENST00000433892 TMEM61Q8N0U2 210 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 GTSF1LQ9H1H1 148 aa8.64□□□□□ -1.03
CD44-209ENST00000433892 SMCPP49901 116 aaPredicted RBP8.63□□□□□ -1.03
CD44-209ENST00000433892 UBE2D3P61077 147 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 UBE2D2P62837 147 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 KHDC1LQ5JSQ8 128 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 CFAP126Q5VTH2 177 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 APCP25054 2843 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 CD28P10747 220 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 RNASE13Q5GAN3 156 aaKnown RBP8.63□□□□□ -1.03
CD44-209ENST00000433892 Q6ZSN1 163 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 ZNF418Q8TF45 676 aaPredicted RBP8.63□□□□□ -1.03
CD44-209ENST00000433892 TNFRSF18Q9Y5U5 241 aa8.63□□□□□ -1.03
CD44-209ENST00000433892 CR1P17927 2039 aa8.62□□□□□ -1.03
CD44-209ENST00000433892 GAGE12HA6NDE8 117 aa8.62□□□□□ -1.03
CD44-209ENST00000433892 FAM104AQ969W3 186 aa8.62□□□□□ -1.03
CD44-209ENST00000433892 SPXQ9BT56 116 aa8.62□□□□□ -1.03
CD44-209ENST00000433892 SONP18583 2426 aaKnown RBP8.62□□□□□ -1.03
CD44-209ENST00000433892 TRAV2A0A0B4J234 112 aa8.61□□□□□ -1.03
CD44-209ENST00000433892 TMEM238C9JI98 176 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 142.3 ms