RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 FAM223BA6NKX1 122 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 SOCS3O14543 225 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 OVOL1O14753 267 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 EMP1P54849 157 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 C5orf47Q569G3 176 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 BRD3OSQ6XYD6 125 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 FAM223AQ8IWN6 122 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 CSDC2Q9Y534 153 aaKnown RBP11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 TRBV7-7A0A0K0K1E9 115 aa11.97□□□□□ -0.49
CHMP1A-201ENST00000397901 FAM240AA0A1B0GVK7 77 aa11.96□□□□□ -0.49
CHMP1A-201ENST00000397901 TSPEAR-AS2P59090 65 aa11.96□□□□□ -0.49
CHMP1A-201ENST00000397901 H7C2G1 150 aa11.96□□□□□ -0.5
CHMP1A-201ENST00000397901 EIF4EBP3O60516 100 aaPredicted RBP11.96□□□□□ -0.5
CHMP1A-201ENST00000397901 RNASE3P12724 160 aaKnown RBP11.96□□□□□ -0.5
CHMP1A-201ENST00000397901 C19orf54Q5BKX5 351 aa11.96□□□□□ -0.5
CHMP1A-201ENST00000397901 IGHV4-39P01824 125 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 ZNF56Q15929 161 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 LY6EQ16553 131 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 C3orf56Q8N813 242 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 Q1RN00 199 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 AMELXQ99217 191 aa11.95□□□□□ -0.5
CHMP1A-201ENST00000397901 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 IGHV1-69DA0A0B4J2H0 117 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 M0R2P5 195 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 NDUFA4O00483 81 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 JPT2Q9H910 190 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 MUC4Q99102 2169 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 ELANEP08246 267 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 LGALS3P17931 250 aaKnown RBP11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 PMVKQ15126 192 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 C2orf82Q6UX34 121 aa11.94□□□□□ -0.5
CHMP1A-201ENST00000397901 ABCA2Q9BZC7 2435 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 TRBV30A0A0K0K1B3 111 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 J3QQQ9 107 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 ATP5J2P56134 94 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 TP53TG1Q9Y2A0 90 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 LINC00694P0DN24 101 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 FAM19A4Q96LR4 140 aa11.93□□□□□ -0.5
CHMP1A-201ENST00000397901 TSHBP01222 138 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 TMEM170BQ5T4T1 132 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 TMEM101Q96IK0 257 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 SPANXDQ9BXN6 97 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 H3BT86 120 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 PF4V1P10720 104 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 RPL39P62891 51 aaKnown RBP11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 RHPN1-AS1Q9BWJ2 59 aa11.92□□□□□ -0.5
CHMP1A-201ENST00000397901 A0A087WWL8 130 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 PPP1R17O96001 155 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 MED14OSP0DP75 135 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 EDN2P20800 178 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 MAP1AP78559 2803 aaPredicted RBP11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 DEFB121Q5J5C9 76 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 MUSTN1Q8IVN3 82 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 SPXQ9BT56 116 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 IMUPQ9GZP8 106 aa11.91□□□□□ -0.5
CHMP1A-201ENST00000397901 IGSF10Q6WRI0 2623 aa11.9□□□□□ -0.5
CHMP1A-201ENST00000397901 F5H697 171 aa11.9□□□□□ -0.5
CHMP1A-201ENST00000397901 LINC00315P59091 139 aa11.9□□□□□ -0.5
CHMP1A-201ENST00000397901 TMEM141Q96I45 108 aa11.9□□□□□ -0.5
CHMP1A-201ENST00000397901 COL12A1Q99715 3063 aa11.9□□□□□ -0.5
CHMP1A-201ENST00000397901 IGIPA6NJ69 53 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 IGHV1-69P01742 117 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 C9orf153Q5TBE3 101 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 SUMO4Q6EEV6 95 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 KIF25-AS1Q9Y6Z4 181 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 H7C423 109 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 TRIAP1O43715 76 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 NDUFA7O95182 113 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 C3orf22Q8N5N4 141 aa11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 BEX4Q9NWD9 120 aaPredicted RBP11.89□□□□□ -0.51
CHMP1A-201ENST00000397901 APRG1Q8IVJ8 170 aa11.88□□□□□ -0.51
CHMP1A-201ENST00000397901 LRRC75A-AS1Q8N1F1 130 aa11.88□□□□□ -0.51
CHMP1A-201ENST00000397901 FAM236AA0A1B0GUQ0 79 aa11.88□□□□□ -0.51
CHMP1A-201ENST00000397901 FAM236BA0A1B0GV22 79 aa11.88□□□□□ -0.51
CHMP1A-201ENST00000397901 LEPROTO15243 131 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 IGHV4-38-2P0DP08 117 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 BLCAPP62952 87 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 FLNCQ14315 2725 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 TRAV12-3A0A0B4J271 114 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 NXPH4O95158 308 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 FAM74A4Q5TZK3 123 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 POM121L12Q8N7R1 296 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 ZNRF2Q8NHG8 242 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 DUX3Q96PT4 197 aa11.87□□□□□ -0.51
CHMP1A-201ENST00000397901 TRGV11A0A075B6L2 103 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 SMIM9A6NGZ8 99 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 H3BUX3 64 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 POLR2KP53803 58 aaKnown RBP11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 USMG5Q96IX5 58 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 TIMM17AQ99595 171 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 J3KT08 172 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 ZNF876PQ49A33 203 aa11.86□□□□□ -0.51
CHMP1A-201ENST00000397901 IGHV4OR15-8A0A075B7B6 117 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 A0A087WW49 117 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 SDHAF1A6NFY7 115 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 UQCRQO14949 82 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 ZNF256Q9Y2P7 627 aaPredicted RBP11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 A0A1B0GX51 115 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 KLLNB2CW77 178 aa11.85□□□□□ -0.51
CHMP1A-201ENST00000397901 VCYO14598 125 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms