RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 LRCOL1A6NCL2 159 aa11.24□□□□□ -0.61
HMGN4-201ENST00000377575 MGPP08493 103 aa11.24□□□□□ -0.61
HMGN4-201ENST00000377575 TRGC1P0CF51 173 aa11.24□□□□□ -0.61
HMGN4-201ENST00000377575 FUSP35637 526 aaKnown RBP eCLIP11.24□□□□□ -0.61
HMGN4-201ENST00000377575 NKX2-5P52952 324 aaPredicted RBP11.24□□□□□ -0.61
HMGN4-201ENST00000377575 MAPKAPK5-AS1Q8N8E1 139 aa11.24□□□□□ -0.61
HMGN4-201ENST00000377575 KIF25-AS1Q9Y6Z4 181 aa11.24□□□□□ -0.61
HMGN4-201ENST00000377575 APOBP04114 4563 aaKnown RBP11.24□□□□□ -0.61
HMGN4-201ENST00000377575 TRBV6-8A0A0A6YYG3 113 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 H7C1H1 209 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 ELOBQ15370 118 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 TMEM97Q5BJF2 176 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 NUDT10Q8NFP7 164 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 NTN5Q8WTR8 489 aaPredicted RBP11.23□□□□□ -0.61
HMGN4-201ENST00000377575 RMI2Q96E14 147 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 NUDT11Q96G61 164 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 RPP21Q9H633 154 aaKnown RBP11.23□□□□□ -0.61
HMGN4-201ENST00000377575 COX11Q9Y6N1 276 aa11.23□□□□□ -0.61
HMGN4-201ENST00000377575 A0A1B0GVG6 124 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 K7EN84 100 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 CTRLP40313 264 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 PKIAP61925 76 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 C4orf48Q5BLP8 95 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 LYZL1Q6UWQ5 148 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 OCC1Q8TAD7 63 aa11.22□□□□□ -0.61
HMGN4-201ENST00000377575 RNASE7Q9H1E1 156 aaKnown RBP11.22□□□□□ -0.61
HMGN4-201ENST00000377575 Q8N814 137 aa11.21□□□□□ -0.61
HMGN4-201ENST00000377575 PCLOQ9Y6V0 5065 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 IGLV5-52A0A0A0MRZ9 124 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 CEBPGP53567 150 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 WDR73Q6P4I2 378 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 DNAJC30Q96LL9 226 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 EIF5A2Q9GZV4 153 aaKnown RBP11.2□□□□□ -0.62
HMGN4-201ENST00000377575 DPH3P1Q9H4G8 78 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 KLK12Q9UKR0 248 aa11.2□□□□□ -0.62
HMGN4-201ENST00000377575 TMEM262E9PQX1 116 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 M0QY20 66 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 NDUFS6O75380 124 aaKnown RBP11.19□□□□□ -0.62
HMGN4-201ENST00000377575 NTF3P20783 257 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 GCSHP23434 173 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 SUMO4Q6EEV6 95 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 CHCHD5Q9BSY4 110 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 CNFNQ9BYD5 112 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 KRTAP17-1Q9BYP8 105 aa11.19□□□□□ -0.62
HMGN4-201ENST00000377575 Q0VG73 95 aa11.18□□□□□ -0.62
HMGN4-201ENST00000377575 TWIST1Q15672 202 aa11.18□□□□□ -0.62
HMGN4-201ENST00000377575 Q8N1X5 172 aa11.18□□□□□ -0.62
HMGN4-201ENST00000377575 UBE2WQ96B02 151 aa11.18□□□□□ -0.62
HMGN4-201ENST00000377575 FAM210AQ96ND0 272 aa11.18□□□□□ -0.62
HMGN4-201ENST00000377575 TRBV25-1A0A075B6N4 114 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 IGKV2D-24A0A075B6R9 120 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 GATCO43716 136 aaKnown RBP11.17□□□□□ -0.62
HMGN4-201ENST00000377575 CRPP02741 224 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 KRTAP10-1P60331 282 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 RASL11AQ6T310 242 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 FAM231DQ6ZW35 169 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 SMIM7Q9BQ49 75 aa11.17□□□□□ -0.62
HMGN4-201ENST00000377575 MPV17L2Q567V2 206 aa11.16□□□□□ -0.62
HMGN4-201ENST00000377575 A8MWL6 223 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 ANGP03950 147 aaKnown RBP11.15□□□□□ -0.62
HMGN4-201ENST00000377575 CT83Q5H943 113 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 ATRAIDQ6UW56 229 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 NTM-AS1Q6ZSK4 140 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 SMIM15Q7Z3B0 74 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 C15orf54Q8N8G6 183 aa11.15□□□□□ -0.62
HMGN4-201ENST00000377575 IGHV1-24A0A0C4DH33 117 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 IQCJQ1A5X6 159 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 GTSF1Q8WW33 167 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 C1orf43Q9BWL3 253 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 KRTAP4-5Q9BYR2 181 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 NIT2Q9NQR4 276 aa11.14□□□□□ -0.63
HMGN4-201ENST00000377575 ZNF727A8MUV8 499 aa11.13□□□□□ -0.63
HMGN4-201ENST00000377575 LECT2O14960 151 aa11.13□□□□□ -0.63
HMGN4-201ENST00000377575 WFDC2Q14508 124 aa11.13□□□□□ -0.63
HMGN4-201ENST00000377575 SRP19P09132 144 aaKnown RBP11.12□□□□□ -0.63
HMGN4-201ENST00000377575 GAGE6Q13070 117 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 LINC01551Q86U37 167 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 Q8N976 141 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 BAALCQ8WXS3 180 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 FRZBQ92765 325 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 BORCS7Q96B45 105 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 PGLYRP4Q96LB8 373 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 TMEM70Q9BUB7 260 aa11.12□□□□□ -0.63
HMGN4-201ENST00000377575 MIAQ16674 131 aa11.11□□□□□ -0.63
HMGN4-201ENST00000377575 ABCA13Q86UQ4 5058 aa11.11□□□□□ -0.63
HMGN4-201ENST00000377575 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.1□□□□□ -0.63
HMGN4-201ENST00000377575 XGP55808 180 aa11.1□□□□□ -0.63
HMGN4-201ENST00000377575 RBX1P62877 108 aa11.1□□□□□ -0.63
HMGN4-201ENST00000377575 ENHOQ6UWT2 76 aa11.1□□□□□ -0.63
HMGN4-201ENST00000377575 TMEM243Q9BU79 118 aa11.1□□□□□ -0.63
HMGN4-201ENST00000377575 COTL1Q14019 142 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 FAM74A3Q4VXF1 159 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 TEX261Q6UWH6 196 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 GATD1Q8NB37 220 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 TSKUQ8WUA8 353 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 GFRA4Q9GZZ7 299 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 OSTCQ9NRP0 149 aa11.09□□□□□ -0.63
HMGN4-201ENST00000377575 TRAV26-2A0A0B4J265 109 aa11.08□□□□□ -0.64
HMGN4-201ENST00000377575 UBE2L6O14933 153 aa11.08□□□□□ -0.64
HMGN4-201ENST00000377575 FOXA3P55318 350 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms