RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 PPP1R17O96001 155 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 P0DMU3 169 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 FAM231AP0DMU4 169 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 FAM231CP0DMU5 169 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 CHCHD1Q96BP2 118 aaKnown RBP13.22□□□□□ -0.29
CLN3-206ENST00000360019 HIST1H2BLQ99880 126 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 C20orf78Q9BR46 151 aa13.22□□□□□ -0.29
CLN3-206ENST00000360019 S100A2P29034 98 aa13.21□□□□□ -0.29
CLN3-206ENST00000360019 C18orf15Q96N68 181 aa13.21□□□□□ -0.29
CLN3-206ENST00000360019 Q9UF83 564 aa13.21□□□□□ -0.29
CLN3-206ENST00000360019 CELA1Q9UNI1 258 aa13.21□□□□□ -0.29
CLN3-206ENST00000360019 HSBP1O75506 76 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 FA2HQ7L5A8 372 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 FAM19A2Q8N3H0 131 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 TRBV6-5A0A0K0K1A5 114 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 FABP4P15090 132 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 SMIM2Q9BVW6 85 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 NXT2Q9NPJ8 142 aaKnown RBP13.2□□□□□ -0.3
CLN3-206ENST00000360019 NIT2Q9NQR4 276 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 AP5S1Q9NUS5 200 aa13.2□□□□□ -0.3
CLN3-206ENST00000360019 H7C1H1 209 aa13.19□□□□□ -0.3
CLN3-206ENST00000360019 PMCHP20382 165 aa13.19□□□□□ -0.3
CLN3-206ENST00000360019 Q8N8P6 123 aa13.19□□□□□ -0.3
CLN3-206ENST00000360019 MRAPQ8TCY5 172 aa13.19□□□□□ -0.3
CLN3-206ENST00000360019 ST20Q9HBF5 79 aa13.19□□□□□ -0.3
CLN3-206ENST00000360019 PMCHL1Q16048 86 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 TM2D3Q9BRN9 247 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 TMEM70Q9BUB7 260 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 IGHV1-24A0A0C4DH33 117 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 LINC01546A6NGU7 62 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 CIDEAO60543 219 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 AMTP48728 403 aa13.18□□□□□ -0.3
CLN3-206ENST00000360019 POLR2KP53803 58 aaKnown RBP13.18□□□□□ -0.3
CLN3-206ENST00000360019 SDHAF1A6NFY7 115 aa13.17□□□□□ -0.3
CLN3-206ENST00000360019 FHL2Q14192 279 aa13.17□□□□□ -0.3
CLN3-206ENST00000360019 NEGR1Q7Z3B1 354 aa13.17□□□□□ -0.3
CLN3-206ENST00000360019 TMEM18Q96B42 140 aa13.17□□□□□ -0.3
CLN3-206ENST00000360019 SPART-AS1P0CW21 52 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 RPL32P62910 135 aaKnown RBP13.16□□□□□ -0.3
CLN3-206ENST00000360019 SLC25A29Q8N8R3 303 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 NEXN-AS1Q8NBZ9 246 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 SPATA25Q9BR10 227 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 K7EQD1 137 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 TCAPO15273 167 aa13.16□□□□□ -0.3
CLN3-206ENST00000360019 A0A096LNJ9 63 aa13.15□□□□□ -0.3
CLN3-206ENST00000360019 DAD1P61803 113 aa13.15□□□□□ -0.3
CLN3-206ENST00000360019 PACRGQ96M98 296 aaPredicted RBP13.15□□□□□ -0.3
CLN3-206ENST00000360019 C11orf68Q9H3H3 251 aaKnown RBP13.15□□□□□ -0.3
CLN3-206ENST00000360019 TRGV4A0A0C4DH28 118 aa13.14□□□□□ -0.31
CLN3-206ENST00000360019 TRBV27A0A0K0K1C4 114 aa13.14□□□□□ -0.31
CLN3-206ENST00000360019 AKR1D1P51857 326 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 OR10D4PQ8NGN7 298 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 DEFB104AQ8WTQ1 72 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 MEGF8Q7Z7M0 2845 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 TRBV6-4A0A1B0GX49 114 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 VCYO14598 125 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 TNFRSF18Q9Y5U5 241 aa13.13□□□□□ -0.31
CLN3-206ENST00000360019 TRBV10-1A0A0K0K1A3 114 aa13.12□□□□□ -0.31
CLN3-206ENST00000360019 DNAJC30Q96LL9 226 aa13.12□□□□□ -0.31
CLN3-206ENST00000360019 COL7A1Q02388 2944 aa13.12□□□□□ -0.31
CLN3-206ENST00000360019 A0A0J9YWU9 116 aa13.11□□□□□ -0.31
CLN3-206ENST00000360019 LAGE3Q14657 143 aa13.11□□□□□ -0.31
CLN3-206ENST00000360019 TEX48A0A1B0GUV7 120 aa13.11□□□□□ -0.31
CLN3-206ENST00000360019 LOC100131303A0A0U1RQF7 123 aa13.1□□□□□ -0.31
CLN3-206ENST00000360019 RHOHQ15669 191 aa13.1□□□□□ -0.31
CLN3-206ENST00000360019 ZNRF2Q8NHG8 242 aa13.1□□□□□ -0.31
CLN3-206ENST00000360019 KIR2DL4Q99706 377 aa13.1□□□□□ -0.31
CLN3-206ENST00000360019 HHLA3Q9XRX5 114 aa13.1□□□□□ -0.31
CLN3-206ENST00000360019 K7EMI3 77 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 HBDP02042 147 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 C12orf74Q32Q52 190 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 TRBV7-3A0A075B6L6 115 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 I3L3M4 83 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 ATP5G1P05496 136 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 LINC00173Q6ZV60 143 aa13.09□□□□□ -0.31
CLN3-206ENST00000360019 GAGE12JA6NER3 117 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 TSHBP01222 138 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 FCER1GP30273 86 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 CRYBA4P53673 196 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 RPL36AP83881 106 aaKnown RBP13.08□□□□□ -0.32
CLN3-206ENST00000360019 GAGE1Q13065 139 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 GAGE4Q13068 117 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 GAGE5Q13069 117 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 GAGE13Q4V321 117 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 ORMDL2Q53FV1 153 aa13.08□□□□□ -0.32
CLN3-206ENST00000360019 RPL36ALQ969Q0 106 aaKnown RBP13.08□□□□□ -0.32
CLN3-206ENST00000360019 LEPROTL1O95214 131 aa13.07□□□□□ -0.32
CLN3-206ENST00000360019 PHLDA1Q8WV24 401 aaPredicted RBP13.07□□□□□ -0.32
CLN3-206ENST00000360019 B9D2Q9BPU9 175 aa13.07□□□□□ -0.32
CLN3-206ENST00000360019 PRO0255Q9UI72 69 aa13.07□□□□□ -0.32
CLN3-206ENST00000360019 IGHV3-38A0A0C4DH36 116 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 NUDT3O95989 172 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 BTF3P20290 206 aaKnown RBP13.06□□□□□ -0.32
CLN3-206ENST00000360019 PRADC1Q9BSG0 188 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 ZMAT4Q9H898 229 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 UBE2D3P61077 147 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 UBE2D2P62837 147 aa13.06□□□□□ -0.32
CLN3-206ENST00000360019 LINC00694P0DN24 101 aa13.04□□□□□ -0.32
CLN3-206ENST00000360019 HTN3P15516 51 aa13.04□□□□□ -0.32
CLN3-206ENST00000360019 VSIG2Q96IQ7 327 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms