RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 BORCS7Q96B45 105 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 GFRA4Q9GZZ7 299 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 FOXA3P55318 350 aaPredicted RBP11.51□□□□□ -0.57
CLN3-203ENST00000357806 CLLU1Q5K131 121 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 SUMO4Q6EEV6 95 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 SMIM15Q7Z3B0 74 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 PGLYRP4Q96LB8 373 aa11.51□□□□□ -0.57
CLN3-203ENST00000357806 FAM231BA6NCW3 169 aa11.5□□□□□ -0.57
CLN3-203ENST00000357806 HIGD1CA8MV81 97 aa11.5□□□□□ -0.57
CLN3-203ENST00000357806 TNP2Q05952 138 aa11.5□□□□□ -0.57
CLN3-203ENST00000357806 NFE4Q86UQ8 179 aa11.5□□□□□ -0.57
CLN3-203ENST00000357806 V9GYV3 84 aa11.5□□□□□ -0.57
CLN3-203ENST00000357806 M0QY20 66 aa11.49□□□□□ -0.57
CLN3-203ENST00000357806 DNAJC30Q96LL9 226 aa11.49□□□□□ -0.57
CLN3-203ENST00000357806 IGHV3-30P01768 117 aa11.48□□□□□ -0.57
CLN3-203ENST00000357806 IGHV3-33P01772 117 aa11.48□□□□□ -0.57
CLN3-203ENST00000357806 IGHV3-30-3P0DP02 117 aa11.48□□□□□ -0.57
CLN3-203ENST00000357806 IGHV3-30-5P0DP03 117 aa11.48□□□□□ -0.57
CLN3-203ENST00000357806 TNFRSF18Q9Y5U5 241 aa11.48□□□□□ -0.57
CLN3-203ENST00000357806 IFITM2Q01629 132 aa11.47□□□□□ -0.57
CLN3-203ENST00000357806 RASL11AQ6T310 242 aa11.47□□□□□ -0.57
CLN3-203ENST00000357806 Q6ZRN7 208 aaPredicted RBP11.47□□□□□ -0.57
CLN3-203ENST00000357806 DAZ4Q86SG3 579 aaKnown RBP11.47□□□□□ -0.57
CLN3-203ENST00000357806 DAZ3Q9NR90 486 aaKnown RBP11.47□□□□□ -0.57
CLN3-203ENST00000357806 PKD1P98161 4303 aa11.47□□□□□ -0.57
CLN3-203ENST00000357806 A0A1B0GUT8 65 aa11.46□□□□□ -0.57
CLN3-203ENST00000357806 TMEM97Q5BJF2 176 aa11.46□□□□□ -0.57
CLN3-203ENST00000357806 URGCP-MRPS24S4R325 110 aa11.46□□□□□ -0.57
CLN3-203ENST00000357806 TRBV6-8A0A0A6YYG3 113 aa11.45□□□□□ -0.58
CLN3-203ENST00000357806 IBA57-AS1B1ANH7 110 aa11.45□□□□□ -0.58
CLN3-203ENST00000357806 LAGE3Q14657 143 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 NIT1Q86X76 327 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 NIT2Q9NQR4 276 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 NAT8BQ9UHF3 227 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 PKHD1P08F94 4074 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 KCNIP4Q6PIL6 250 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 Q8N3U1 123 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 NUP35Q8NFH5 326 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 FRZBQ92765 325 aa11.44□□□□□ -0.58
CLN3-203ENST00000357806 BIRC6Q9NR09 4857 aa11.43□□□□□ -0.58
CLN3-203ENST00000357806 CHCHD7Q9BUK0 85 aa11.43□□□□□ -0.58
CLN3-203ENST00000357806 A0A087WX48 190 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 TRAV26-2A0A0B4J265 109 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 SMIM27A0A1W2PRY6 76 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 PNRC1Q12796 327 aaPredicted RBP11.42□□□□□ -0.58
CLN3-203ENST00000357806 RIGQ13278 110 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 GATD1Q8NB37 220 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 TMEM191AQ9H0A3 160 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 Q9HAA7 133 aa11.42□□□□□ -0.58
CLN3-203ENST00000357806 TRBV25-1A0A075B6N4 114 aa11.41□□□□□ -0.58
CLN3-203ENST00000357806 PKIAP61925 76 aa11.41□□□□□ -0.58
CLN3-203ENST00000357806 UQCC3Q6UW78 93 aa11.4□□□□□ -0.58
CLN3-203ENST00000357806 NTM-AS1Q6ZSK4 140 aa11.4□□□□□ -0.58
CLN3-203ENST00000357806 CHCHD5Q9BSY4 110 aa11.4□□□□□ -0.58
CLN3-203ENST00000357806 TRAV8-3A0A0A6YYJ7 113 aa11.39□□□□□ -0.59
CLN3-203ENST00000357806 TMEM262E9PQX1 116 aa11.39□□□□□ -0.59
CLN3-203ENST00000357806 PSCAO43653 123 aa11.39□□□□□ -0.59
CLN3-203ENST00000357806 ELOBQ15370 118 aa11.39□□□□□ -0.59
CLN3-203ENST00000357806 IGHV1-24A0A0C4DH33 117 aa11.38□□□□□ -0.59
CLN3-203ENST00000357806 EREGO14944 169 aa11.38□□□□□ -0.59
CLN3-203ENST00000357806 PPP1R2P9O14990 202 aa11.38□□□□□ -0.59
CLN3-203ENST00000357806 IQCJQ1A5X6 159 aa11.38□□□□□ -0.59
CLN3-203ENST00000357806 RPL39LQ96EH5 51 aaKnown RBP11.38□□□□□ -0.59
CLN3-203ENST00000357806 A0A1B0GW15 77 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 COTL1Q14019 142 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 MPV17L2Q567V2 206 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 SPATA12Q7Z6I5 190 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 AMN1Q8IY45 258 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 KLK12Q9UKR0 248 aa11.37□□□□□ -0.59
CLN3-203ENST00000357806 RAB4AP20338 218 aa11.36□□□□□ -0.59
CLN3-203ENST00000357806 MRAP2Q96G30 205 aa11.36□□□□□ -0.59
CLN3-203ENST00000357806 RNF185Q96GF1 192 aa11.36□□□□□ -0.59
CLN3-203ENST00000357806 TM2D2Q9BX73 214 aa11.36□□□□□ -0.59
CLN3-203ENST00000357806 A0A087WTM6 91 aa11.35□□□□□ -0.59
CLN3-203ENST00000357806 ANAPC16Q96DE5 110 aa11.35□□□□□ -0.59
CLN3-203ENST00000357806 TMEM243Q9BU79 118 aa11.35□□□□□ -0.59
CLN3-203ENST00000357806 DNAH11Q96DT5 4516 aa11.35□□□□□ -0.59
CLN3-203ENST00000357806 TRBV6-5A0A0K0K1A5 114 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 SDHAF1A6NFY7 115 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 C16orf90A8MZG2 172 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 MT-ND4LP03901 98 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 S100A8P05109 93 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 CAMPP49913 170 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 GAGE6Q13070 117 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 ATRAIDQ6UW56 229 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 COMMD7Q86VX2 200 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 UBE2WQ96B02 151 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 RMI2Q96E14 147 aa11.34□□□□□ -0.59
CLN3-203ENST00000357806 CRPP02741 224 aa11.33□□□□□ -0.6
CLN3-203ENST00000357806 ANGP03950 147 aaKnown RBP11.33□□□□□ -0.6
CLN3-203ENST00000357806 AMTP48728 403 aa11.33□□□□□ -0.6
CLN3-203ENST00000357806 HBBP68871 147 aa11.33□□□□□ -0.6
CLN3-203ENST00000357806 Q0VG73 95 aa11.33□□□□□ -0.6
CLN3-203ENST00000357806 MRPL54Q6P161 138 aaKnown RBP11.33□□□□□ -0.6
CLN3-203ENST00000357806 COX11Q9Y6N1 276 aa11.33□□□□□ -0.6
CLN3-203ENST00000357806 TMEM218A2RU14 115 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 F8W036 122 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 UBE2L6O14933 153 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 NCR2O95944 276 aa11.32□□□□□ -0.6
CLN3-203ENST00000357806 ADCYAP1P18509 176 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms