RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 ALMS1Q8TCU4 4167 aa16.92■□□□□ 0.3
HOXC9-201ENST00000303450 RASL11AQ6T310 242 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 LYPD5Q6UWN5 251 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 NEXN-AS1Q8NBZ9 246 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 LINC00588Q9Y4M8 146 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 TRAV26-2A0A0B4J265 109 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 LINC00694P0DN24 101 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 AMN1Q8IY45 258 aa16.91■□□□□ 0.3
HOXC9-201ENST00000303450 GATD1Q8NB37 220 aa16.9■□□□□ 0.3
HOXC9-201ENST00000303450 URGCP-MRPS24S4R325 110 aa16.9■□□□□ 0.3
HOXC9-201ENST00000303450 RAB4AP20338 218 aa16.89■□□□□ 0.29
HOXC9-201ENST00000303450 RNF185Q96GF1 192 aa16.89■□□□□ 0.29
HOXC9-201ENST00000303450 TNFRSF18Q9Y5U5 241 aa16.89■□□□□ 0.29
HOXC9-201ENST00000303450 FRZBQ92765 325 aa16.88■□□□□ 0.29
HOXC9-201ENST00000303450 DNAJC30Q96LL9 226 aa16.88■□□□□ 0.29
HOXC9-201ENST00000303450 TRAV9-1A0A075B6T8 112 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 UBE2D3P61077 147 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 UBE2D2P62837 147 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 FAM104BQ5XKR9 115 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 GTSF1LQ9H1H1 148 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 NIT2Q9NQR4 276 aa16.87■□□□□ 0.29
HOXC9-201ENST00000303450 MRPS16Q9Y3D3 137 aaKnown RBP16.86■□□□□ 0.29
HOXC9-201ENST00000303450 SREK1IP1Q8N9Q2 155 aaPredicted RBP16.86■□□□□ 0.29
HOXC9-201ENST00000303450 MRAP2Q96G30 205 aa16.86■□□□□ 0.29
HOXC9-201ENST00000303450 TIRAPP58753 221 aa16.85■□□□□ 0.29
HOXC9-201ENST00000303450 KMT2CQ8NEZ4 4911 aaKnown RBP16.84■□□□□ 0.29
HOXC9-201ENST00000303450 MRPL51Q4U2R6 128 aaKnown RBP16.83■□□□□ 0.28
HOXC9-201ENST00000303450 ATRAIDQ6UW56 229 aa16.83■□□□□ 0.28
HOXC9-201ENST00000303450 RPL39LQ96EH5 51 aaKnown RBP16.83■□□□□ 0.28
HOXC9-201ENST00000303450 UPK3BQ9BT76 320 aa16.83■□□□□ 0.28
HOXC9-201ENST00000303450 DNAH1Q9P2D7 4330 aa16.83■□□□□ 0.28
HOXC9-201ENST00000303450 DAZ4Q86SG3 579 aaKnown RBP16.82■□□□□ 0.28
HOXC9-201ENST00000303450 DAZ3Q9NR90 486 aaKnown RBP16.82■□□□□ 0.28
HOXC9-201ENST00000303450 VPS13DQ5THJ4 4388 aa16.81■□□□□ 0.28
HOXC9-201ENST00000303450 IGHV3-38A0A0C4DH36 116 aa16.81■□□□□ 0.28
HOXC9-201ENST00000303450 OR10J3Q5JRS4 329 aa16.81■□□□□ 0.28
HOXC9-201ENST00000303450 SMKR1H3BMG3 65 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 GAS8-AS1O95177 125 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 NCR2O95944 276 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 CKS2P33552 79 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 LELP1Q5T871 98 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 Q9H8V8 135 aa16.8■□□□□ 0.28
HOXC9-201ENST00000303450 TRAV8-6A0A0B4J262 113 aa16.78■□□□□ 0.28
HOXC9-201ENST00000303450 PPP1R17O96001 155 aa16.78■□□□□ 0.28
HOXC9-201ENST00000303450 RPS10P46783 165 aaKnown RBP16.78■□□□□ 0.28
HOXC9-201ENST00000303450 SACSQ9NZJ4 4579 aa16.77■□□□□ 0.28
HOXC9-201ENST00000303450 KMT2AQ03164 3969 aa16.77■□□□□ 0.27
HOXC9-201ENST00000303450 IGLV2-18A0A075B6J9 118 aa16.76■□□□□ 0.27
HOXC9-201ENST00000303450 TRBV6-5A0A0K0K1A5 114 aa16.76■□□□□ 0.27
HOXC9-201ENST00000303450 ELOBQ15370 118 aa16.76■□□□□ 0.27
HOXC9-201ENST00000303450 TMEM136Q6ZRR5 245 aa16.76■□□□□ 0.27
HOXC9-201ENST00000303450 ST20Q9HBF5 79 aa16.76■□□□□ 0.27
HOXC9-201ENST00000303450 SDHAF1A6NFY7 115 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 D6R8Y8 96 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 SIVA1O15304 175 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 PPBPP02775 128 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 TMEM97Q5BJF2 176 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 WFDC10BQ8IUB3 73 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 COX19Q49B96 90 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 NRACQ8N912 160 aa16.75■□□□□ 0.27
HOXC9-201ENST00000303450 TGIF2-C20orf24A0A0A6YYL0 155 aa16.74■□□□□ 0.27
HOXC9-201ENST00000303450 ORMDL3Q8N138 153 aa16.74■□□□□ 0.27
HOXC9-201ENST00000303450 SMCO4Q9NRQ5 59 aa16.74■□□□□ 0.27
HOXC9-201ENST00000303450 TRBV6-8A0A0A6YYG3 113 aa16.73■□□□□ 0.27
HOXC9-201ENST00000303450 HLA-DQA1P01909 254 aa16.73■□□□□ 0.27
HOXC9-201ENST00000303450 GNB1LQ9BYB4 327 aa16.73■□□□□ 0.27
HOXC9-201ENST00000303450 HYDINQ4G0P3 5121 aa16.71■□□□□ 0.27
HOXC9-201ENST00000303450 TRBV24-1A0A075B6N3 115 aa16.71■□□□□ 0.27
HOXC9-201ENST00000303450 COTL1Q14019 142 aa16.71■□□□□ 0.27
HOXC9-201ENST00000303450 CBLN2Q8IUK8 224 aa16.71■□□□□ 0.27
HOXC9-201ENST00000303450 TMEM70Q9BUB7 260 aa16.71■□□□□ 0.27
HOXC9-201ENST00000303450 M0R2N4 97 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 TNFRSF6BO95407 300 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 SUMO2P61956 95 aaKnown RBP16.7■□□□□ 0.26
HOXC9-201ENST00000303450 NTM-AS1Q6ZSK4 140 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 DEFB104AQ8WTQ1 72 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 PRELID3AQ96N28 172 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 TRBV25-1A0A075B6N4 114 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 I3L3M4 83 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 APCSP02743 223 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 PMCHP20382 165 aa16.7■□□□□ 0.26
HOXC9-201ENST00000303450 DNAH6Q9C0G6 4158 aa16.69■□□□□ 0.26
HOXC9-201ENST00000303450 NBDYA0A0U1RRE5 68 aa16.69■□□□□ 0.26
HOXC9-201ENST00000303450 MT-ND6P03923 174 aa16.69■□□□□ 0.26
HOXC9-201ENST00000303450 POLR2KP53803 58 aaKnown RBP16.69■□□□□ 0.26
HOXC9-201ENST00000303450 C20orf78Q9BR46 151 aa16.69■□□□□ 0.26
HOXC9-201ENST00000303450 IGHV1-24A0A0C4DH33 117 aa16.68■□□□□ 0.26
HOXC9-201ENST00000303450 PHOX2AO14813 284 aa16.68■□□□□ 0.26
HOXC9-201ENST00000303450 NPYP01303 97 aa16.68■□□□□ 0.26
HOXC9-201ENST00000303450 DNAH10OSP0CZ25 163 aa16.68■□□□□ 0.26
HOXC9-201ENST00000303450 RYR2Q92736 4967 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 TRBV27A0A0K0K1C4 114 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 VCYO14598 125 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 IQCJQ1A5X6 159 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 TTC32Q5I0X7 151 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 YPEL4Q96NS1 127 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 CHCHD5Q9BSY4 110 aa16.67■□□□□ 0.26
HOXC9-201ENST00000303450 LAMTOR2Q9Y2Q5 125 aa16.66■□□□□ 0.26
HOXC9-201ENST00000303450 TRAV9-2A0A087WT02 112 aa16.65■□□□□ 0.26
HOXC9-201ENST00000303450 AMTP48728 403 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 146.2 ms