RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 TP53TG3Q9ULZ0 132 aa13.15□□□□□ -0.3
SHANK1-201ENST00000293441 ARHGAP21Q5T5U3 1957 aa13.14□□□□□ -0.31
SHANK1-201ENST00000293441 C22orf34Q6ZV56 151 aa13.14□□□□□ -0.31
SHANK1-201ENST00000293441 GAGE12HA6NDE8 117 aa13.14□□□□□ -0.31
SHANK1-201ENST00000293441 PTPRQQ9UMZ3 2332 aa13.14□□□□□ -0.31
SHANK1-201ENST00000293441 CTRLP40313 264 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 P0DMU3 169 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 FAM231AP0DMU4 169 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 FAM231CP0DMU5 169 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 HIST2H2BDQ6DRA6 164 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 PCDH15Q96QU1 1955 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 HIGD2BQ4VC39 106 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 ANKRD39Q53RE8 183 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 NUPR1O60356 82 aa13.13□□□□□ -0.31
SHANK1-201ENST00000293441 H0YGX0 51 aa13.12□□□□□ -0.31
SHANK1-201ENST00000293441 LINC01545Q5VT33 79 aa13.12□□□□□ -0.31
SHANK1-201ENST00000293441 FAM110AQ9BQ89 295 aa13.12□□□□□ -0.31
SHANK1-201ENST00000293441 NDUFB1O75438 58 aa13.12□□□□□ -0.31
SHANK1-201ENST00000293441 CXCL5P42830 114 aa13.11□□□□□ -0.31
SHANK1-201ENST00000293441 NCOA6Q14686 2063 aaPredicted RBP13.11□□□□□ -0.31
SHANK1-201ENST00000293441 IGKV2-24A0A0C4DH68 120 aa13.11□□□□□ -0.31
SHANK1-201ENST00000293441 CEMP1Q6PRD7 247 aaPredicted RBP13.11□□□□□ -0.31
SHANK1-201ENST00000293441 RNF183Q96D59 192 aa13.11□□□□□ -0.31
SHANK1-201ENST00000293441 TRBV6-1A0A0K0K1D8 114 aa13.11□□□□□ -0.31
SHANK1-201ENST00000293441 Q6ZTI0 123 aa13.11□□□□□ -0.31
SHANK1-201ENST00000293441 IGKV1D-37A0A075B6S9 117 aa13.1□□□□□ -0.31
SHANK1-201ENST00000293441 FAM222AQ5U5X8 452 aa13.1□□□□□ -0.31
SHANK1-201ENST00000293441 Q6ZVH6 145 aa13.1□□□□□ -0.31
SHANK1-201ENST00000293441 CDPF1Q6NVV7 123 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 MIR7-3HGQ8N6C7 128 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 DIRC1Q969H9 104 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 NUP210LQ5VU65 1888 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 LY6G6DO95868 133 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 TNCP24821 2201 aa13.09□□□□□ -0.31
SHANK1-201ENST00000293441 Q6ZUT4 128 aa13.08□□□□□ -0.31
SHANK1-201ENST00000293441 PRO3102Q9H379 93 aa13.08□□□□□ -0.31
SHANK1-201ENST00000293441 HILS1P60008 231 aa13.08□□□□□ -0.32
SHANK1-201ENST00000293441 LINC00269Q8N2A0 174 aa13.08□□□□□ -0.32
SHANK1-201ENST00000293441 DEFB114Q30KQ6 69 aa13.08□□□□□ -0.32
SHANK1-201ENST00000293441 TTTY13Q9BZ97 58 aa13.08□□□□□ -0.32
SHANK1-201ENST00000293441 C11orf86A6NJI1 115 aa13.08□□□□□ -0.32
SHANK1-201ENST00000293441 DSCAMO60469 2012 aa13.07□□□□□ -0.32
SHANK1-201ENST00000293441 LINC00482Q8N8I6 264 aa13.07□□□□□ -0.32
SHANK1-201ENST00000293441 NREPQ16612 68 aa13.07□□□□□ -0.32
SHANK1-201ENST00000293441 DEFB131BA0A096LNP1 70 aa13.07□□□□□ -0.32
SHANK1-201ENST00000293441 IGF1P05019 195 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 LGALS9O00182 355 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 ZNF80P51504 273 aaPredicted RBP13.06□□□□□ -0.32
SHANK1-201ENST00000293441 PRB2P02812 416 aaPredicted RBP13.06□□□□□ -0.32
SHANK1-201ENST00000293441 SPANXDQ9BXN6 97 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 TRBV10-1A0A0K0K1A3 114 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 CHKB-CPT1BH3BT56 60 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 Q6ZSV7 163 aa13.06□□□□□ -0.32
SHANK1-201ENST00000293441 CRYGDP07320 174 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 LECT2O14960 151 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 E9PLD3 99 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 IGHV1-58A0A0C4DH39 117 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 B9D2Q9BPU9 175 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 IGKV3D-7A0A0C4DH55 119 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 C14orf177Q52M58 125 aa13.05□□□□□ -0.32
SHANK1-201ENST00000293441 MED12LQ86YW9 2145 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 C20orf173Q96LM9 149 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 C10orf99Q6UWK7 81 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 C1orf229Q6ZS94 237 aaPredicted RBP13.04□□□□□ -0.32
SHANK1-201ENST00000293441 CREBBPQ92793 2442 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 REG3AQ06141 175 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 C20orf203Q8NBC4 194 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 FRMD6-AS1P0C7T7 363 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 SHISA2Q6UWI4 295 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 ALPK3Q96L96 1907 aa13.04□□□□□ -0.32
SHANK1-201ENST00000293441 C19orf71A6NCJ1 209 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 H3BQ85 93 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 RBM3P98179 157 aaKnown RBP13.03□□□□□ -0.32
SHANK1-201ENST00000293441 CLEC2BQ92478 149 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 TDRG1Q3Y452 100 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 LRCOL1A6NCL2 159 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 LYRM9A8MSI8 78 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 NFE4Q86UQ8 179 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 LINC00574Q9H8X3 128 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 SPATA25Q9BR10 227 aa13.03□□□□□ -0.32
SHANK1-201ENST00000293441 C11orf71Q6IPW1 123 aa13.02□□□□□ -0.32
SHANK1-201ENST00000293441 FXYD2P54710 66 aa13.02□□□□□ -0.32
SHANK1-201ENST00000293441 ZFAND2AQ8N6M9 145 aa13.02□□□□□ -0.32
SHANK1-201ENST00000293441 K7EQG2 157 aa13.02□□□□□ -0.33
SHANK1-201ENST00000293441 KIAA1549Q9HCM3 1950 aa13.02□□□□□ -0.33
SHANK1-201ENST00000293441 PCNX3Q9H6A9 2034 aa13.02□□□□□ -0.33
SHANK1-201ENST00000293441 OTOGLQ3ZCN5 2332 aa13.01□□□□□ -0.33
SHANK1-201ENST00000293441 ACYP1P07311 99 aa13.01□□□□□ -0.33
SHANK1-201ENST00000293441 SMIM9A6NGZ8 99 aa13.01□□□□□ -0.33
SHANK1-201ENST00000293441 ODF1Q14990 250 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 HIVEP2P31629 2446 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 ODF3Q96PU9 254 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 TANC2Q9HCD6 1990 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 KIR2DL5BA0A0G2JN68 375 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 KIR2DL5BA0A0G2JPC4 375 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 KIR2DL5AQ8N109 375 aa13□□□□□ -0.33
SHANK1-201ENST00000293441 A0A0B4J2C4 111 aa12.99□□□□□ -0.33
SHANK1-201ENST00000293441 H0Y9J4 135 aa12.99□□□□□ -0.33
SHANK1-201ENST00000293441 COX7BP24311 80 aa12.99□□□□□ -0.33
SHANK1-201ENST00000293441 BRWD1-AS2P59051 145 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms