RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 ZNF702PQ9H963 129 aa12.31□□□□□ -0.44
VPS54-201ENST00000272322 H7C2G1 150 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 K7EP34 96 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 CRYGDP07320 174 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 PHLDA1Q8WV24 401 aaPredicted RBP12.3□□□□□ -0.44
VPS54-201ENST00000272322 ZNF580Q9UK33 172 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 LINC01546A6NGU7 62 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 SIVA1O15304 175 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 LGALS1P09382 135 aaKnown RBP12.3□□□□□ -0.44
VPS54-201ENST00000272322 MYMXA0A1B0GTQ4 84 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 XCL2Q9UBD3 114 aa12.3□□□□□ -0.44
VPS54-201ENST00000272322 K7EMT4 169 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 ZNF479Q96JC4 524 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 ATP6V0BQ99437 205 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 LOC107984156A0A0G2JMH3 177 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 VCYO14598 125 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 C12orf74Q32Q52 190 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 ARL17AQ8IVW1 177 aa12.29□□□□□ -0.44
VPS54-201ENST00000272322 WFDC11Q8NEX6 87 aa12.28□□□□□ -0.44
VPS54-201ENST00000272322 DYNLRB2Q8TF09 96 aa12.28□□□□□ -0.44
VPS54-201ENST00000272322 DLX4Q92988 240 aaPredicted RBP12.28□□□□□ -0.44
VPS54-201ENST00000272322 GATA3P23771 443 aa12.28□□□□□ -0.44
VPS54-201ENST00000272322 ZNF843Q8N446 348 aa12.28□□□□□ -0.44
VPS54-201ENST00000272322 SH2D6Q7Z4S9 175 aa12.27□□□□□ -0.44
VPS54-201ENST00000272322 MORN3Q6PF18 240 aaPredicted RBP12.27□□□□□ -0.45
VPS54-201ENST00000272322 LINC01587Q99440 93 aa12.27□□□□□ -0.45
VPS54-201ENST00000272322 A0A096LNT2 108 aa12.27□□□□□ -0.45
VPS54-201ENST00000272322 POLR2KP53803 58 aaKnown RBP12.27□□□□□ -0.45
VPS54-201ENST00000272322 WFDC2Q14508 124 aa12.27□□□□□ -0.45
VPS54-201ENST00000272322 ZNRF2Q8NHG8 242 aa12.27□□□□□ -0.45
VPS54-201ENST00000272322 Q6YL49 198 aa12.26□□□□□ -0.45
VPS54-201ENST00000272322 IGHV3-53P01767 116 aa12.26□□□□□ -0.45
VPS54-201ENST00000272322 DSCR9P59020 149 aa12.26□□□□□ -0.45
VPS54-201ENST00000272322 SYT8Q8NBV8 401 aa12.26□□□□□ -0.45
VPS54-201ENST00000272322 MRPL16Q9NX20 251 aaKnown RBP12.26□□□□□ -0.45
VPS54-201ENST00000272322 M0QY20 66 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 TSPEAR-AS2P59090 65 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 UFSP1Q6NVU6 142 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 IGLL5B9A064 214 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 K7ERU9 68 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 NPC2P61916 151 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 SPXQ9BT56 116 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 A0A0J9YXV3 536 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 SPAG8Q99932 426 aaPredicted RBP12.25□□□□□ -0.45
VPS54-201ENST00000272322 PGPEP1Q9NXJ5 209 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 UNC79Q9P2D8 2635 aa12.25□□□□□ -0.45
VPS54-201ENST00000272322 LINC01549A6NIU2 74 aa12.24□□□□□ -0.45
VPS54-201ENST00000272322 PRSS47A8MTI9 375 aa12.24□□□□□ -0.45
VPS54-201ENST00000272322 ETDBQ3ZM63 59 aa12.24□□□□□ -0.45
VPS54-201ENST00000272322 RBMY1BA6NDE4 496 aaKnown RBP12.24□□□□□ -0.45
VPS54-201ENST00000272322 RBMY1EA6NEQ0 496 aaKnown RBP12.24□□□□□ -0.45
VPS54-201ENST00000272322 A8MZ25 164 aa12.24□□□□□ -0.45
VPS54-201ENST00000272322 RBMY1DP0C7P1 496 aaKnown RBP12.24□□□□□ -0.45
VPS54-201ENST00000272322 PMVKQ15126 192 aa12.24□□□□□ -0.45
VPS54-201ENST00000272322 TEX48A0A1B0GUV7 120 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 IGIPA6NJ69 53 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 DEFB113Q30KQ7 82 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 Q6ZSN1 163 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 CR1P17927 2039 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 IGLV4-69A0A075B6H9 119 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 HIGD1BQ9P298 99 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 TRAV12-1A0A0B4J245 112 aa12.23□□□□□ -0.45
VPS54-201ENST00000272322 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.22□□□□□ -0.45
VPS54-201ENST00000272322 IGKV2-29A2NJV5 120 aaPredicted RBP12.22□□□□□ -0.45
VPS54-201ENST00000272322 ELANEP08246 267 aa12.22□□□□□ -0.45
VPS54-201ENST00000272322 ZNF418Q8TF45 676 aaPredicted RBP12.21□□□□□ -0.45
VPS54-201ENST00000272322 TM2D2Q9BX73 214 aa12.21□□□□□ -0.45
VPS54-201ENST00000272322 PPP1R17O96001 155 aa12.21□□□□□ -0.45
VPS54-201ENST00000272322 C9orf85Q96MD7 179 aa12.21□□□□□ -0.45
VPS54-201ENST00000272322 E9PLD3 99 aa12.21□□□□□ -0.46
VPS54-201ENST00000272322 A0A0U1RRA0 63 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 RAX2Q96IS3 184 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 TRAV8-3A0A0A6YYJ7 113 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 TRAV2A0A0B4J234 112 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 LINC01619G3V211 115 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 FOXI2Q6ZQN5 318 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 WFDC10AQ9H1F0 79 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 VCX2Q9H322 139 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 VWFP04275 2813 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 PRSS2P07478 247 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 CD28P10747 220 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 TNFRSF18Q9Y5U5 241 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 ATRQ13535 2644 aa12.2□□□□□ -0.46
VPS54-201ENST00000272322 TRBV7-3A0A075B6L6 115 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 H3BMM0 161 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 AZU1P20160 251 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 MED14OSP0DP75 135 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 PSMB2P49721 201 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 HERVK_113P61574 105 aa12.19□□□□□ -0.46
VPS54-201ENST00000272322 LGALS3P17931 250 aaKnown RBP12.18□□□□□ -0.46
VPS54-201ENST00000272322 FLNBO75369 2602 aaKnown RBP12.18□□□□□ -0.46
VPS54-201ENST00000272322 BRI3O95415 125 aa12.18□□□□□ -0.46
VPS54-201ENST00000272322 TRBV27A0A0K0K1C4 114 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 J3QLI3 93 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 INSL3P51460 131 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 LGALS9O00182 355 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 NXPH4O95158 308 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 TRPT1Q86TN4 253 aaKnown RBP12.17□□□□□ -0.46
VPS54-201ENST00000272322 PLA2G2AP14555 144 aa12.17□□□□□ -0.46
VPS54-201ENST00000272322 J3QQQ9 107 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms