RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ITPR2Q14571 2701 aa9.46□□□□□ -0.89
SPTLC1-201ENST00000262554 CMC4P56277 68 aaPredicted RBP9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 GAGE1Q13065 139 aa9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 TMEM97Q5BJF2 176 aa9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 PTH2Q96A98 100 aa9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 SMR3AQ99954 134 aa9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 TP53TG1Q9Y2A0 90 aa9.46□□□□□ -0.9
SPTLC1-201ENST00000262554 IGKV2D-26A0A0A0MRZ7 120 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 A8MWV9 139 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 SAP30O75446 220 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 RIPPLY3P57055 190 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 ACANP16112 2415 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 ORAOV1Q8WV07 137 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 TMEM141Q96I45 108 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 SPXQ9BT56 116 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 EDA2RQ9HAV5 297 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 COX11Q9Y6N1 276 aa9.45□□□□□ -0.9
SPTLC1-201ENST00000262554 UNC79Q9P2D8 2635 aa9.44□□□□□ -0.9
SPTLC1-201ENST00000262554 PRM2P04554 102 aa9.44□□□□□ -0.9
SPTLC1-201ENST00000262554 HSD52Q0P140 79 aa9.44□□□□□ -0.9
SPTLC1-201ENST00000262554 RHOHQ15669 191 aa9.44□□□□□ -0.9
SPTLC1-201ENST00000262554 XCL2Q9UBD3 114 aa9.44□□□□□ -0.9
SPTLC1-201ENST00000262554 WNK1Q9H4A3 2382 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 PRSS29PA6NIE9 313 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 IGIPA6NJ69 53 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 I3L3M4 83 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 LY6G6DO95868 133 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 PROK1P58294 105 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 SEC11AP67812 179 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 NSUN5P1Q3KNT7 163 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 C11orf72Q8NBR9 251 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 DEFB104AQ8WTQ1 72 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 TIMM17AQ99595 171 aa9.43□□□□□ -0.9
SPTLC1-201ENST00000262554 RPL39P62891 51 aaKnown RBP9.42□□□□□ -0.9
SPTLC1-201ENST00000262554 HIGD1BQ9P298 99 aa9.42□□□□□ -0.9
SPTLC1-201ENST00000262554 IGHV3-73A0A0B4J1V6 119 aa9.42□□□□□ -0.9
SPTLC1-201ENST00000262554 NF1P21359 2839 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 ADARB2-AS1A8MUL3 147 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 RHODO00212 210 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 TSHBP01222 138 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 PMVKQ15126 192 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 UFSP1Q6NVU6 142 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 Q6ZVH6 145 aa9.41□□□□□ -0.9
SPTLC1-201ENST00000262554 TAX1BP3O14907 124 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 IGLV1-51P01701 117 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 BEAN1Q3B7T3 259 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 PAPPA-AS1Q5QFB9 102 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 CFAP126Q5VTH2 177 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 TTTY13Q9BZ97 58 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 TNFRSF18Q9Y5U5 241 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 NACAE9PAV3 2078 aa9.4□□□□□ -0.9
SPTLC1-201ENST00000262554 IGHV3OR16-12A0A075B7B8 117 aa9.4□□□□□ -0.91
SPTLC1-201ENST00000262554 TRAV8-6A0A0B4J262 113 aa9.4□□□□□ -0.91
SPTLC1-201ENST00000262554 A6NDN8 102 aa9.4□□□□□ -0.91
SPTLC1-201ENST00000262554 FAM110AQ9BQ89 295 aa9.4□□□□□ -0.91
SPTLC1-201ENST00000262554 MRPL16Q9NX20 251 aaKnown RBP9.4□□□□□ -0.91
SPTLC1-201ENST00000262554 TRBV25-1A0A075B6N4 114 aa9.39□□□□□ -0.91
SPTLC1-201ENST00000262554 NDUFA11Q86Y39 141 aa9.39□□□□□ -0.91
SPTLC1-201ENST00000262554 C1orf158Q8N1D5 194 aa9.39□□□□□ -0.91
SPTLC1-201ENST00000262554 CST9LQ9H4G1 147 aa9.39□□□□□ -0.91
SPTLC1-201ENST00000262554 NPSP0C0P6 89 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 C20orf203Q8NBC4 194 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 OR11H2Q8NH07 326 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 CHAC1Q9BUX1 264 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 AKAP9Q99996 3911 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 FASNP49327 2511 aaKnown RBP9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 RS1O15537 224 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 P0DMU3 169 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 FAM231AP0DMU4 169 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 FAM231CP0DMU5 169 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 AZU1P20160 251 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 MDFIQ99750 246 aa9.38□□□□□ -0.91
SPTLC1-201ENST00000262554 HIVEP2P31629 2446 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 IGLV4-69A0A075B6H9 119 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 TMEM238LA0A1B0GVL6 79 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 E9PLD3 99 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 GHRHP01286 108 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 IGHV3-53P01767 116 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 MAPKAPK5-AS1Q8N8E1 139 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 MTORP42345 2549 aa9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 GCN1Q92616 2671 aaKnown RBP9.37□□□□□ -0.91
SPTLC1-201ENST00000262554 Q6ZSN1 163 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 DNAJC30Q96LL9 226 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 MYMXA0A1B0GTQ4 84 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 C11orf86A6NJI1 115 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 PF4P02776 101 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 HERVK_113P61574 105 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 VAMP3Q15836 100 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 IL17DQ8TAD2 202 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 RNASE8Q8TDE3 154 aaKnown RBP9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 TMEM263Q8WUH6 116 aaKnown RBP9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 CUBNO60494 3623 aa9.36□□□□□ -0.91
SPTLC1-201ENST00000262554 TRGV1A0A0A0MS02 117 aa9.35□□□□□ -0.91
SPTLC1-201ENST00000262554 PTTG1IPP53801 180 aa9.35□□□□□ -0.91
SPTLC1-201ENST00000262554 KRTAP10-3P60369 221 aa9.35□□□□□ -0.91
SPTLC1-201ENST00000262554 PRADC1Q9BSG0 188 aa9.35□□□□□ -0.91
SPTLC1-201ENST00000262554 C19orf73Q9NVV2 129 aa9.35□□□□□ -0.91
SPTLC1-201ENST00000262554 H3BRM9 83 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 GCSHP23434 173 aa9.34□□□□□ -0.91
SPTLC1-201ENST00000262554 EMP1P54849 157 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms