RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 AMELXQ99217 191 aa13.8□□□□□ -0.2
CPSF3-201ENST00000238112 TMEM223A0PJW6 202 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 HTN1P15515 57 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 UBE2D3P61077 147 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 UBE2D2P62837 147 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 TCTEX1D4Q5JR98 221 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 CFAP126Q5VTH2 177 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 RNF152Q8N8N0 203 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 MAPK1IP1LQ8NDC0 245 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 GTSF1LQ9H1H1 148 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 LEPROTO15243 131 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 VCX2Q9H322 139 aa13.79□□□□□ -0.2
CPSF3-201ENST00000238112 CFC1BP0CG36 223 aa13.78□□□□□ -0.2
CPSF3-201ENST00000238112 CFC1P0CG37 223 aa13.78□□□□□ -0.2
CPSF3-201ENST00000238112 ZNF702PQ9H963 129 aa13.78□□□□□ -0.2
CPSF3-201ENST00000238112 KNCNA6PVL3 124 aa13.77□□□□□ -0.21
CPSF3-201ENST00000238112 AZU1P20160 251 aa13.77□□□□□ -0.21
CPSF3-201ENST00000238112 CFAP46Q8IYW2 2715 aa13.77□□□□□ -0.21
CPSF3-201ENST00000238112 IGLV4-3A0A075B6K6 122 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 A0A096LNT2 108 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 RHODO00212 210 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 RBMY1A1P0DJD3 496 aaKnown RBP13.76□□□□□ -0.21
CPSF3-201ENST00000238112 RBMY1CP0DJD4 496 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 ZNF22P17026 224 aaPredicted RBP13.76□□□□□ -0.21
CPSF3-201ENST00000238112 RBMY1FQ15415 496 aaKnown RBP13.76□□□□□ -0.21
CPSF3-201ENST00000238112 INSL3P51460 131 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 C10orf126Q8N4M7 172 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 SPATA25Q9BR10 227 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 C1QTNF4Q9BXJ3 329 aa13.76□□□□□ -0.21
CPSF3-201ENST00000238112 IGHV3-64A0A075B6Q5 118 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 IGHV3-73A0A0B4J1V6 119 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 Q6YL49 198 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 A0A0J9YXV3 536 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 DEFB131AP59861 70 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 ZNF418Q8TF45 676 aaPredicted RBP13.75□□□□□ -0.21
CPSF3-201ENST00000238112 PRO1854Q9UHT4 67 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 CRYBG3Q68DQ2 2970 aa13.75□□□□□ -0.21
CPSF3-201ENST00000238112 SMCPP49901 116 aaPredicted RBP13.74□□□□□ -0.21
CPSF3-201ENST00000238112 ATP6V0E2Q8NHE4 81 aa13.74□□□□□ -0.21
CPSF3-201ENST00000238112 TRBV20-1A0A075B6N2 111 aa13.74□□□□□ -0.21
CPSF3-201ENST00000238112 SLURP1P55000 103 aa13.74□□□□□ -0.21
CPSF3-201ENST00000238112 SMAGPQ0VAQ4 97 aa13.74□□□□□ -0.21
CPSF3-201ENST00000238112 EDA2RQ9HAV5 297 aa13.74□□□□□ -0.21
CPSF3-201ENST00000238112 CD28P10747 220 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 FOXI1Q12951 378 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 BEX4Q9NWD9 120 aaPredicted RBP13.73□□□□□ -0.21
CPSF3-201ENST00000238112 FLNCQ14315 2725 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 USP9XQ93008 2570 aaPredicted RBP13.73□□□□□ -0.21
CPSF3-201ENST00000238112 SCGB1C2P0DMR2 95 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 SCGB1A1P11684 91 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 DEFB136Q30KP8 78 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 DUX3Q96PT4 197 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 TNFRSF18Q9Y5U5 241 aa13.73□□□□□ -0.21
CPSF3-201ENST00000238112 TRAV2A0A0B4J234 112 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 TCL1BO95988 128 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 PYGO1Q9Y3Y4 419 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 DOPEY2Q9Y3R5 2298 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 A4D1N5 150 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 PROK1P58294 105 aa13.72□□□□□ -0.21
CPSF3-201ENST00000238112 SORL1Q92673 2214 aa13.71□□□□□ -0.21
CPSF3-201ENST00000238112 A8MWV9 139 aa13.71□□□□□ -0.21
CPSF3-201ENST00000238112 H3BMM0 161 aa13.71□□□□□ -0.21
CPSF3-201ENST00000238112 M0R2P5 195 aa13.7□□□□□ -0.22
CPSF3-201ENST00000238112 FSHBP01225 129 aa13.7□□□□□ -0.22
CPSF3-201ENST00000238112 Q5PR19 223 aa13.7□□□□□ -0.22
CPSF3-201ENST00000238112 C18orf65Q6ZTR6 163 aa13.7□□□□□ -0.22
CPSF3-201ENST00000238112 ZNF415Q09FC8 603 aa13.69□□□□□ -0.22
CPSF3-201ENST00000238112 SPXQ9BT56 116 aa13.69□□□□□ -0.22
CPSF3-201ENST00000238112 TIMM21Q9BVV7 248 aa13.69□□□□□ -0.22
CPSF3-201ENST00000238112 A8MTW9 85 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 MUSTN1Q8IVN3 82 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 RAX2Q96IS3 184 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 PEMTQ9UBM1 199 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 RBMY1BA6NDE4 496 aaKnown RBP13.68□□□□□ -0.22
CPSF3-201ENST00000238112 RBMY1EA6NEQ0 496 aaKnown RBP13.68□□□□□ -0.22
CPSF3-201ENST00000238112 PRM2P04554 102 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 RBMY1DP0C7P1 496 aaKnown RBP13.68□□□□□ -0.22
CPSF3-201ENST00000238112 IGHV3-30-3P0DP02 117 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 IGHV4-31P0DP07 118 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 CRYBA4P53673 196 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 CREBBPQ92793 2442 aa13.68□□□□□ -0.22
CPSF3-201ENST00000238112 CSMD2Q7Z408 3487 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 MRPS36P82909 103 aaKnown RBP13.67□□□□□ -0.22
CPSF3-201ENST00000238112 CEMP1Q6PRD7 247 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-201ENST00000238112 PTH2Q96A98 100 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 USP9YO00507 2555 aaPredicted RBP13.67□□□□□ -0.22
CPSF3-201ENST00000238112 A0A0B4J2C4 111 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 A0A0J9YXY3 114 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 TMEM61Q8N0U2 210 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 ERG28Q9UKR5 140 aa13.67□□□□□ -0.22
CPSF3-201ENST00000238112 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.66□□□□□ -0.22
CPSF3-201ENST00000238112 PIK3CD-AS1Q5SR53 167 aa13.66□□□□□ -0.22
CPSF3-201ENST00000238112 TEN1Q86WV5 123 aa13.66□□□□□ -0.22
CPSF3-201ENST00000238112 TMEM263Q8WUH6 116 aaKnown RBP13.66□□□□□ -0.22
CPSF3-201ENST00000238112 IGHV3-33P01772 117 aa13.65□□□□□ -0.22
CPSF3-201ENST00000238112 PPDPFLQ8WWR9 84 aa13.65□□□□□ -0.22
CPSF3-201ENST00000238112 FAM104AQ969W3 186 aa13.65□□□□□ -0.22
CPSF3-201ENST00000238112 RNASE13Q5GAN3 156 aaKnown RBP13.65□□□□□ -0.22
CPSF3-201ENST00000238112 KHDC1LQ5JSQ8 128 aa13.65□□□□□ -0.22
CPSF3-201ENST00000238112 DYNLRB2Q8TF09 96 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms