RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 FCER1GP30273 86 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 DAZ2Q13117 558 aaKnown RBP13.08□□□□□ -0.32
VIM-201ENST00000224237 LAGE3Q14657 143 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 LGALS9BQ3B8N2 356 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 CMYA5Q8N3K9 4069 aa13.08□□□□□ -0.32
VIM-201ENST00000224237 TRGV1A0A0A0MS02 117 aa13.07□□□□□ -0.32
VIM-201ENST00000224237 M0R143 59 aa13.07□□□□□ -0.32
VIM-201ENST00000224237 APOC4P55056 127 aa13.07□□□□□ -0.32
VIM-201ENST00000224237 LINC00173Q6ZV60 143 aa13.07□□□□□ -0.32
VIM-201ENST00000224237 TCAPO15273 167 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 RS1O15537 224 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 PLAC8L1A1L4L8 177 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 ORMDL2Q53FV1 153 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 SPATA12Q7Z6I5 190 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 UQCR10Q9UDW1 63 aa13.06□□□□□ -0.32
VIM-201ENST00000224237 IGHV3-73A0A0B4J1V6 119 aa13.05□□□□□ -0.32
VIM-201ENST00000224237 IGLC3P0DOY3 106 aa13.05□□□□□ -0.32
VIM-201ENST00000224237 POLR2KP53803 58 aaKnown RBP13.05□□□□□ -0.32
VIM-201ENST00000224237 ZFP2Q6ZN57 461 aa13.05□□□□□ -0.32
VIM-201ENST00000224237 NOP10Q9NPE3 64 aaKnown RBP13.05□□□□□ -0.32
VIM-201ENST00000224237 NACAE9PAV3 2078 aa13.04□□□□□ -0.32
VIM-201ENST00000224237 SDHAF1A6NFY7 115 aa13.04□□□□□ -0.32
VIM-201ENST00000224237 ATOH7Q8N100 152 aa13.04□□□□□ -0.32
VIM-201ENST00000224237 SNHG12Q9BXW3 62 aa13.04□□□□□ -0.32
VIM-201ENST00000224237 ZMAT5Q9UDW3 170 aaKnown RBP13.04□□□□□ -0.32
VIM-201ENST00000224237 VCYO14598 125 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 EGFEM1PQ0D2K5 195 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 Q6ZTI0 123 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 OR4C5Q8NGB2 326 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 OVOL2Q9BRP0 275 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 ANK2Q01484 3957 aa13.03□□□□□ -0.32
VIM-201ENST00000224237 TRBV27A0A0K0K1C4 114 aa13.02□□□□□ -0.32
VIM-201ENST00000224237 SMIM9A6NGZ8 99 aa13.02□□□□□ -0.32
VIM-201ENST00000224237 NUDT3O95989 172 aa13.02□□□□□ -0.32
VIM-201ENST00000224237 KRTAP10-11P60412 298 aa13.02□□□□□ -0.32
VIM-201ENST00000224237 KIR2DL4Q99706 377 aa13.02□□□□□ -0.32
VIM-201ENST00000224237 TRAV4A0A0B4J268 109 aa13.02□□□□□ -0.33
VIM-201ENST00000224237 IGHV3-53P01767 116 aa13.02□□□□□ -0.33
VIM-201ENST00000224237 IGHV4-30-4P0DP06 118 aa13.02□□□□□ -0.33
VIM-201ENST00000224237 MDFIQ99750 246 aa13.02□□□□□ -0.33
VIM-201ENST00000224237 LINC01545Q5VT33 79 aa13.01□□□□□ -0.33
VIM-201ENST00000224237 IFI27L1Q96BM0 104 aa13.01□□□□□ -0.33
VIM-201ENST00000224237 MAJINQ3KP22 176 aa13□□□□□ -0.33
VIM-201ENST00000224237 X6R8D5 127 aa13□□□□□ -0.33
VIM-201ENST00000224237 EREGO14944 169 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 NEGR1Q7Z3B1 354 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 NBEAL2Q6ZNJ1 2754 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 H0Y8G0 127 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 G0S2P27469 103 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 DEFB135Q30KP9 77 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 C18orf15Q96N68 181 aa12.99□□□□□ -0.33
VIM-201ENST00000224237 HSBP1L1C9JCN9 74 aa12.98□□□□□ -0.33
VIM-201ENST00000224237 G3V4G9 280 aa12.98□□□□□ -0.33
VIM-201ENST00000224237 Q6ZSN1 163 aa12.98□□□□□ -0.33
VIM-201ENST00000224237 ZNF479Q96JC4 524 aa12.98□□□□□ -0.33
VIM-201ENST00000224237 TRGV2A0A075B6R0 118 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 CIDEAO60543 219 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 ATP5LO75964 103 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 P0DMU3 169 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 FAM231AP0DMU4 169 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 FAM231CP0DMU5 169 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 Q6ZN92 141 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 TOMM6Q96B49 74 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 DNAJC30Q96LL9 226 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 TNFRSF18Q9Y5U5 241 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 A0A1B0GV90 55 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 GAGE12BA1L429 117 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 I3L3M4 83 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 GAGE7O76087 117 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 GAGE12FP0CL80 117 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 GAGE12GP0CL81 117 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 GAGE12IP0CL82 117 aa12.97□□□□□ -0.33
VIM-201ENST00000224237 LINC01549A6NIU2 74 aa12.96□□□□□ -0.33
VIM-201ENST00000224237 EMP1P54849 157 aa12.96□□□□□ -0.33
VIM-201ENST00000224237 C2orf66Q6UXQ4 117 aa12.96□□□□□ -0.33
VIM-201ENST00000224237 NEXN-AS1Q8NBZ9 246 aa12.96□□□□□ -0.33
VIM-201ENST00000224237 MRPS16Q9Y3D3 137 aaKnown RBP12.96□□□□□ -0.33
VIM-201ENST00000224237 HNRNPA3P51991 378 aaKnown RBP12.95□□□□□ -0.34
VIM-201ENST00000224237 NOTCH1P46531 2555 aa12.95□□□□□ -0.34
VIM-201ENST00000224237 RHOHQ15669 191 aa12.95□□□□□ -0.34
VIM-201ENST00000224237 LGALS9CQ6DKI2 356 aa12.95□□□□□ -0.34
VIM-201ENST00000224237 A8MZ25 164 aa12.94□□□□□ -0.34
VIM-201ENST00000224237 RIPPLY3P57055 190 aa12.94□□□□□ -0.34
VIM-201ENST00000224237 OR11H2Q8NH07 326 aa12.94□□□□□ -0.34
VIM-201ENST00000224237 CYSLTR1Q9Y271 337 aa12.94□□□□□ -0.34
VIM-201ENST00000224237 TRBV10-1A0A0K0K1A3 114 aa12.93□□□□□ -0.34
VIM-201ENST00000224237 K7EQD1 137 aa12.93□□□□□ -0.34
VIM-201ENST00000224237 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.93□□□□□ -0.34
VIM-201ENST00000224237 TSHBP01222 138 aa12.93□□□□□ -0.34
VIM-201ENST00000224237 LINC00612Q8N6U2 182 aa12.93□□□□□ -0.34
VIM-201ENST00000224237 SCGB3A1Q96QR1 104 aa12.93□□□□□ -0.34
VIM-201ENST00000224237 hDV102S1A0JD36 115 aa12.92□□□□□ -0.34
VIM-201ENST00000224237 PRSS1P07477 247 aa12.92□□□□□ -0.34
VIM-201ENST00000224237 RNF183Q96D59 192 aa12.92□□□□□ -0.34
VIM-201ENST00000224237 Q9UF83 564 aa12.92□□□□□ -0.34
VIM-201ENST00000224237 MIFP14174 115 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 SAMD5Q5TGI4 173 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 DEFB104AQ8WTQ1 72 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 TP53TG1Q9Y2A0 90 aa12.91□□□□□ -0.34
VIM-201ENST00000224237 LYRM9A8MSI8 78 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms