RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 TRAV26-2A0A0B4J265 109 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 AVPP01185 164 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 RNASE3P12724 160 aaKnown RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 DEFB114Q30KQ6 69 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 TM2D2Q9BX73 214 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 DAZ2Q13117 558 aaKnown RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 DAZ4Q86SG3 579 aaKnown RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 CEND1Q8N111 149 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 TIMM21Q9BVV7 248 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 DAZ3Q9NR90 486 aaKnown RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 H7C423 109 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 K7EP34 96 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 TMEM95Q3KNT9 176 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 MAP6D1Q9H9H5 199 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 FAM208BQ5VWN6 2430 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 CD300EQ496F6 205 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 TMEM61Q8N0U2 210 aa3.41□□□□□ -1.86
SCN1A-210ENST00000635776 RNASE8Q8TDE3 154 aaKnown RBP3.41□□□□□ -1.86
SCN1A-210ENST00000635776 HERVK_113P63121 156 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 MUC4Q99102 2169 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 AGRNO00468 2067 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 TEX48A0A1B0GUV7 120 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 LEPROTO15243 131 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 IFITM1P13164 125 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 PSMB2P49721 201 aa3.4□□□□□ -1.86
SCN1A-210ENST00000635776 MRPL16Q9NX20 251 aaKnown RBP3.4□□□□□ -1.86
SCN1A-210ENST00000635776 GATA1P15976 413 aaPredicted RBP3.4□□□□□ -1.86
SCN1A-210ENST00000635776 FLG2Q5D862 2391 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-210ENST00000635776 IGLV2-18A0A075B6J9 118 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 F8W1H4 67 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 DNAJC9-AS1A6NH13 148 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 CCL25O15444 150 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 BAALCQ8WXS3 180 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 SPANXB1Q9NS25 103 aaPredicted RBP3.4□□□□□ -1.87
SCN1A-210ENST00000635776 TRGV1A0A0A0MS02 117 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 IGHV3-53P01767 116 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 AZU1P20160 251 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 Q6ZSV7 163 aa3.4□□□□□ -1.87
SCN1A-210ENST00000635776 SMIM9A6NGZ8 99 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 J3QQQ9 107 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 SLURP1P55000 103 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 CST9LQ9H4G1 147 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 A0A096LNJ9 63 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 A0A1W2PPM0 123 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 FXYD7P58549 80 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 HILS1P60008 231 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 NDUFA11Q86Y39 141 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 TMEM263Q8WUH6 116 aaKnown RBP3.39□□□□□ -1.87
SCN1A-210ENST00000635776 DLX4Q92988 240 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-210ENST00000635776 CEP295Q9C0D2 2601 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 TRGV4A0A0C4DH28 118 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 A8MTW9 85 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 M0QY20 66 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 TP73-AS1Q9UF72 201 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 TRAV12-2A0A075B6T6 113 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 KNCNA6PVL3 124 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 GHRHP01286 108 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 NFE4Q86UQ8 179 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 CITED2Q99967 270 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-210ENST00000635776 SH2D6Q7Z4S9 175 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 IGHV3OR16-12A0A075B7B8 117 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 PRR9Q5T870 116 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 RPL39LQ96EH5 51 aaKnown RBP3.39□□□□□ -1.87
SCN1A-210ENST00000635776 RAI1Q7Z5J4 1906 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-210ENST00000635776 TAX1BP3O14907 124 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 RS1O15537 224 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 HERV-K104P63124 156 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 OVOL2Q9BRP0 275 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 GAGE12BA1L429 117 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 APOC4P55056 127 aa3.39□□□□□ -1.87
SCN1A-210ENST00000635776 A0A096LNT2 108 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 TRAV4A0A0B4J268 109 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 ADARB2-AS1A8MUL3 147 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 PRR31Q5SQ13 230 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 C9orf66Q5T8R8 295 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 MTURNQ8N3F0 131 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 NRGNQ92686 78 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 ERG28Q9UKR5 140 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 RPL13AP40429 203 aaKnown RBP3.38□□□□□ -1.87
SCN1A-210ENST00000635776 GAGE13Q4V321 117 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 IGF2RP11717 2491 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 A0A0J9YXY3 114 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 CRYGDP07320 174 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 MAPK1IP1LQ8NDC0 245 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 KIF25-AS1Q9Y6Z4 181 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 TMEM262E9PQX1 116 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 PRB1P04280 392 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 PRSS2P07478 247 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 LOC107984156A0A0G2JMH3 177 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 PCP2Q8IVA1 136 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 ARL17AQ8IVW1 177 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 XCL2Q9UBD3 114 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 WDR87Q6ZQQ6 2873 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 ADAMTSL5Q6ZMM2 481 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 A0A1W2PRX2 142 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 K7EQD1 137 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 HHLA3Q9XRX5 114 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 C12orf74Q32Q52 190 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 NCOR2Q9Y618 2525 aa3.38□□□□□ -1.87
SCN1A-210ENST00000635776 TIRAPP58753 221 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms