RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 GRIFINA4D1Z8 144 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 LRCOL1A6NCL2 159 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 IGHV3-30P01768 117 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 IGHV3-33P01772 117 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 IGHV3-30-3P0DP02 117 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 IGHV3-30-5P0DP03 117 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 ZFP82Q8N141 532 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 SAMD10Q9BYL1 202 aa12.78□□□□□ -0.36
CCDC28A-203ENST00000617445 GCSHP23434 173 aa12.77□□□□□ -0.37
CCDC28A-203ENST00000617445 TOR2AQ5JU69 321 aa12.77□□□□□ -0.37
CCDC28A-203ENST00000617445 C14orf178Q8N769 122 aaPredicted RBP12.77□□□□□ -0.37
CCDC28A-203ENST00000617445 Q9HAA7 133 aa12.77□□□□□ -0.37
CCDC28A-203ENST00000617445 ABCA13Q86UQ4 5058 aa12.77□□□□□ -0.37
CCDC28A-203ENST00000617445 TRAV8-3A0A0A6YYJ7 113 aa12.76□□□□□ -0.37
CCDC28A-203ENST00000617445 C1QBP02746 253 aa12.76□□□□□ -0.37
CCDC28A-203ENST00000617445 H2AFB1P0C5Y9 115 aa12.76□□□□□ -0.37
CCDC28A-203ENST00000617445 FUSP35637 526 aaKnown RBP eCLIP12.76□□□□□ -0.37
CCDC28A-203ENST00000617445 TRBV10-1A0A0K0K1A3 114 aa12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 CXCL1P09341 107 aa12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 XGP55808 180 aa12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 KRTAP10-1P60331 282 aa12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 FAM74A4Q5TZK3 123 aa12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 EIF5AL1Q6IS14 154 aaKnown RBP12.75□□□□□ -0.37
CCDC28A-203ENST00000617445 TMSB15BA0A087X1C1 80 aa12.74□□□□□ -0.37
CCDC28A-203ENST00000617445 M0R381 172 aa12.74□□□□□ -0.37
CCDC28A-203ENST00000617445 BAGE2Q86Y30 109 aa12.74□□□□□ -0.37
CCDC28A-203ENST00000617445 MLST8Q9BVC4 326 aa12.74□□□□□ -0.37
CCDC28A-203ENST00000617445 A0A087WWL8 130 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 IGLV5-52A0A0A0MRZ9 124 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 EPM2AB3EWF7 344 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 RAB5CP51148 216 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 AKAP14Q86UN6 197 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 Q8N814 137 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 Q9UF83 564 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 COX11Q9Y6N1 276 aa12.73□□□□□ -0.37
CCDC28A-203ENST00000617445 SCO2A0A1W2PP80 73 aa12.72□□□□□ -0.37
CCDC28A-203ENST00000617445 URGCP-MRPS24S4R325 110 aa12.72□□□□□ -0.37
CCDC28A-203ENST00000617445 A0A1B0GV50 99 aa12.71□□□□□ -0.37
CCDC28A-203ENST00000617445 RPL36AP83881 106 aaKnown RBP12.71□□□□□ -0.37
CCDC28A-203ENST00000617445 RPL36ALQ969Q0 106 aaKnown RBP12.71□□□□□ -0.37
CCDC28A-203ENST00000617445 MANBALQ9NQG1 85 aa12.71□□□□□ -0.37
CCDC28A-203ENST00000617445 hCG_2014768A0A024R1R8 64 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 TRBV7-3A0A075B6L6 115 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 TRAV1-1A0A0B4J248 108 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 RAB4BP61018 213 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 SLC51BQ86UW2 128 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 RMI2Q96E14 147 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 TMEM70Q9BUB7 260 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 CHCHD7Q9BUK0 85 aa12.7□□□□□ -0.38
CCDC28A-203ENST00000617445 TEX46H3BTG2 121 aa12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 OR5AL1P0C617 328 aa12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 DAZ4Q86SG3 579 aaKnown RBP12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 NIT1Q86X76 327 aa12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 OR10G8Q8NGN5 311 aa12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 SSBP4Q9BWG4 385 aaPredicted RBP12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 DAZ3Q9NR90 486 aaKnown RBP12.69□□□□□ -0.38
CCDC28A-203ENST00000617445 SNAI2O43623 268 aa12.68□□□□□ -0.38
CCDC28A-203ENST00000617445 ELOBQ15370 118 aa12.68□□□□□ -0.38
CCDC28A-203ENST00000617445 FRZBQ92765 325 aa12.68□□□□□ -0.38
CCDC28A-203ENST00000617445 RPL35P42766 123 aaKnown RBP12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 SULT1A2P50226 295 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 UBE2D3P61077 147 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 UBE2D2P62837 147 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 KCNIP4Q6PIL6 250 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 Q8N3U1 123 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 OR10AG1Q8NH19 301 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 C11orf52Q96A22 123 aa12.67□□□□□ -0.38
CCDC28A-203ENST00000617445 A0A087WX48 190 aa12.66□□□□□ -0.38
CCDC28A-203ENST00000617445 RPL19P84098 196 aaKnown RBP12.66□□□□□ -0.38
CCDC28A-203ENST00000617445 SPANXN1Q5VSR9 72 aa12.66□□□□□ -0.38
CCDC28A-203ENST00000617445 GNG13Q9P2W3 67 aa12.66□□□□□ -0.38
CCDC28A-203ENST00000617445 PRR27Q6MZM9 219 aa12.65□□□□□ -0.38
CCDC28A-203ENST00000617445 CCL20P78556 96 aa12.64□□□□□ -0.39
CCDC28A-203ENST00000617445 ZNF56Q15929 161 aa12.64□□□□□ -0.39
CCDC28A-203ENST00000617445 C9orf62Q8N4C0 152 aa12.64□□□□□ -0.39
CCDC28A-203ENST00000617445 SMIM12Q96EX1 92 aa12.64□□□□□ -0.39
CCDC28A-203ENST00000617445 TRBV6-8A0A0A6YYG3 113 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 SMIM17P0DL12 118 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 RPS20P60866 119 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 PKIAP61925 76 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 Q0VG73 95 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 TMEM97Q5BJF2 176 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 Q5VSD8 79 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 NEXN-AS1Q8NBZ9 246 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 DAZAP1Q96EP5 407 aaKnown RBP12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 KLK12Q9UKR0 248 aa12.62□□□□□ -0.39
CCDC28A-203ENST00000617445 F5H697 171 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 FAM229AH3BQW9 127 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 PDE6DO43924 150 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 IFNA1P01562 189 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 INAFM2P0DMQ5 153 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 Q8N976 141 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 AP1S3Q96PC3 154 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 DERL1Q9BUN8 251 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 BIN3Q9NQY0 253 aa12.61□□□□□ -0.39
CCDC28A-203ENST00000617445 RBFOX3A6NFN3 312 aa12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 TMEM262E9PQX1 116 aa12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 MEF2BQ02080 365 aaPredicted RBP12.6□□□□□ -0.39
CCDC28A-203ENST00000617445 WFDC2Q14508 124 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms