RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 KIF25-AS1Q9Y6Z4 181 aa12.98□□□□□ -0.33
VRK3-225ENST00000601912 HOXA5P20719 270 aa12.97□□□□□ -0.33
VRK3-225ENST00000601912 FAM74A4Q5TZK3 123 aa12.97□□□□□ -0.33
VRK3-225ENST00000601912 Q6ZWC4 215 aa12.97□□□□□ -0.33
VRK3-225ENST00000601912 CMYA5Q8N3K9 4069 aa12.97□□□□□ -0.33
VRK3-225ENST00000601912 SMKR1H3BMG3 65 aa12.96□□□□□ -0.33
VRK3-225ENST00000601912 NCR2O95944 276 aa12.96□□□□□ -0.33
VRK3-225ENST00000601912 LGALS9BQ3B8N2 356 aa12.96□□□□□ -0.33
VRK3-225ENST00000601912 MRPL16Q9NX20 251 aaKnown RBP12.96□□□□□ -0.33
VRK3-225ENST00000601912 TRGV1A0A0A0MS02 117 aa12.96□□□□□ -0.34
VRK3-225ENST00000601912 F5H697 171 aa12.96□□□□□ -0.34
VRK3-225ENST00000601912 CRYGDP07320 174 aa12.96□□□□□ -0.34
VRK3-225ENST00000601912 IQCJQ1A5X6 159 aa12.96□□□□□ -0.34
VRK3-225ENST00000601912 NOP10Q9NPE3 64 aaKnown RBP12.96□□□□□ -0.34
VRK3-225ENST00000601912 X6R8D5 127 aa12.96□□□□□ -0.34
VRK3-225ENST00000601912 TRAV26-2A0A0B4J265 109 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 PLAC8L1A1L4L8 177 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 LINC00315P59091 139 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 POM121L12Q8N7R1 296 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 OR11H2Q8NH07 326 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 SAMD10Q9BYL1 202 aa12.95□□□□□ -0.34
VRK3-225ENST00000601912 RNF183Q96D59 192 aa12.94□□□□□ -0.34
VRK3-225ENST00000601912 OVOL2Q9BRP0 275 aa12.94□□□□□ -0.34
VRK3-225ENST00000601912 SERF1AO75920 110 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 TNFRSF6BO95407 300 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 PPP1R17O96001 155 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 NPYP01303 97 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 S100A2P29034 98 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 ZNF56Q15929 161 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 LOC105371267A0A1B0GV96 52 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 RHODO00212 210 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 EMP1P54849 157 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 KPRPQ5T749 579 aaPredicted RBP12.93□□□□□ -0.34
VRK3-225ENST00000601912 CFAP126Q5VTH2 177 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 MAP1LC3AQ9H492 121 aa12.93□□□□□ -0.34
VRK3-225ENST00000601912 GAS8-AS1O95177 125 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 GATA1P15976 413 aaPredicted RBP12.92□□□□□ -0.34
VRK3-225ENST00000601912 PDZD11Q5EBL8 140 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 Q6ZTI0 123 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 NIT1Q86X76 327 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 HIST3H2BBQ8N257 126 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 PRSS3P2Q8NHM4 247 aa12.92□□□□□ -0.34
VRK3-225ENST00000601912 RS1O15537 224 aa12.91□□□□□ -0.34
VRK3-225ENST00000601912 MIFP14174 115 aa12.91□□□□□ -0.34
VRK3-225ENST00000601912 SUMO4Q6EEV6 95 aa12.91□□□□□ -0.34
VRK3-225ENST00000601912 RNASEKQ6P5S7 137 aaKnown RBP12.91□□□□□ -0.34
VRK3-225ENST00000601912 NRACQ8N912 160 aa12.91□□□□□ -0.34
VRK3-225ENST00000601912 OR4C5Q8NGB2 326 aa12.91□□□□□ -0.34
VRK3-225ENST00000601912 LOC389332A0A1B0GUA5 103 aa12.9□□□□□ -0.34
VRK3-225ENST00000601912 LINC00614P0C842 121 aa12.9□□□□□ -0.34
VRK3-225ENST00000601912 ESDP10768 282 aa12.9□□□□□ -0.34
VRK3-225ENST00000601912 CHCHD1Q96BP2 118 aaKnown RBP12.9□□□□□ -0.34
VRK3-225ENST00000601912 NUPR1O60356 82 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 LINC00310P59036 64 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 KRTAP21-3Q3LHN1 58 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 ZFP2Q6ZN57 461 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 TP53TG1Q9Y2A0 90 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 TRGV2A0A075B6R0 118 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 IGHV3-73A0A0B4J1V6 119 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 H7C1H1 209 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 HSBP1O75506 76 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 UFSP1Q6NVU6 142 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 FA2HQ7L5A8 372 aa12.89□□□□□ -0.35
VRK3-225ENST00000601912 TRAV4A0A0B4J268 109 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 GAGE12BA1L429 117 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 GAGE7O76087 117 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 GAGE12FP0CL80 117 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 GAGE12GP0CL81 117 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 GAGE12IP0CL82 117 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 IFI27P40305 119 aaPredicted RBP12.88□□□□□ -0.35
VRK3-225ENST00000601912 TMEM18Q96B42 140 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 C20orf78Q9BR46 151 aa12.88□□□□□ -0.35
VRK3-225ENST00000601912 NXT2Q9NPJ8 142 aaKnown RBP12.88□□□□□ -0.35
VRK3-225ENST00000601912 MGAM2Q2M2H8 2515 aa12.87□□□□□ -0.35
VRK3-225ENST00000601912 PRSS47A8MTI9 375 aa12.87□□□□□ -0.35
VRK3-225ENST00000601912 M0QY20 66 aa12.87□□□□□ -0.35
VRK3-225ENST00000601912 PRB2P02812 416 aaPredicted RBP12.87□□□□□ -0.35
VRK3-225ENST00000601912 RPL39LQ96EH5 51 aaKnown RBP12.87□□□□□ -0.35
VRK3-225ENST00000601912 NOTCH1P46531 2555 aa12.87□□□□□ -0.35
VRK3-225ENST00000601912 IGHV4-28A0A0C4DH34 117 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 CIDEAO60543 219 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 PMCHP20382 165 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 SUMO2P61956 95 aaKnown RBP12.86□□□□□ -0.35
VRK3-225ENST00000601912 URB1-AS1Q96HZ7 61 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 AP5S1Q9NUS5 200 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 LYRM9A8MSI8 78 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 FABP4P15090 132 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 HIST1H2BLQ99880 126 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 EDA2RQ9HAV5 297 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 ST20Q9HBF5 79 aa12.86□□□□□ -0.35
VRK3-225ENST00000601912 IFITM10A6NMD0 228 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 K7EIL1 84 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 DEFB121Q5J5C9 76 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 Q8N8P6 123 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 Q8NAQ8 132 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 ZNF479Q96JC4 524 aa12.85□□□□□ -0.35
VRK3-225ENST00000601912 NBEAL2Q6ZNJ1 2754 aa12.84□□□□□ -0.35
VRK3-225ENST00000601912 AMTP48728 403 aa12.84□□□□□ -0.35
VRK3-225ENST00000601912 NIT2Q9NQR4 276 aa12.84□□□□□ -0.35
VRK3-225ENST00000601912 IGHV3-53P01767 116 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 78.7 ms