RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 IGHV3-30-5P0DP03 117 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 TPT1P13693 172 aaKnown RBP10.13□□□□□ -0.79
LIG1-215ENST00000597901 CCL20P78556 96 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 BAGE2Q86Y30 109 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 MLST8Q9BVC4 326 aa10.13□□□□□ -0.79
LIG1-215ENST00000597901 RHODO00212 210 aa10.12□□□□□ -0.79
LIG1-215ENST00000597901 LINC00694P0DN24 101 aa10.12□□□□□ -0.79
LIG1-215ENST00000597901 Q8N1X5 172 aa10.12□□□□□ -0.79
LIG1-215ENST00000597901 A0A087WWL8 130 aa10.11□□□□□ -0.79
LIG1-215ENST00000597901 M0R381 172 aa10.11□□□□□ -0.79
LIG1-215ENST00000597901 FAM74A4Q5TZK3 123 aa10.11□□□□□ -0.79
LIG1-215ENST00000597901 CDPF1Q6NVV7 123 aa10.11□□□□□ -0.79
LIG1-215ENST00000597901 APOBP04114 4563 aaKnown RBP10.1□□□□□ -0.79
LIG1-215ENST00000597901 ZFP82Q8N141 532 aa10.1□□□□□ -0.79
LIG1-215ENST00000597901 TRAV1-1A0A0B4J248 108 aa10.09□□□□□ -0.79
LIG1-215ENST00000597901 LRCOL1A6NCL2 159 aa10.09□□□□□ -0.79
LIG1-215ENST00000597901 PSCAO43653 123 aa10.09□□□□□ -0.79
LIG1-215ENST00000597901 RAB5CP51148 216 aa10.09□□□□□ -0.79
LIG1-215ENST00000597901 RPL19P84098 196 aaKnown RBP10.09□□□□□ -0.79
LIG1-215ENST00000597901 Q9HAA7 133 aa10.09□□□□□ -0.79
LIG1-215ENST00000597901 A0A087WWC5 75 aa10.08□□□□□ -0.8
LIG1-215ENST00000597901 RPL35P42766 123 aaKnown RBP10.08□□□□□ -0.8
LIG1-215ENST00000597901 EIF5AL1Q6IS14 154 aaKnown RBP10.08□□□□□ -0.8
LIG1-215ENST00000597901 Q8N3U1 123 aa10.08□□□□□ -0.8
LIG1-215ENST00000597901 SSBP4Q9BWG4 385 aaPredicted RBP10.08□□□□□ -0.8
LIG1-215ENST00000597901 GNG13Q9P2W3 67 aa10.08□□□□□ -0.8
LIG1-215ENST00000597901 CXCL1P09341 107 aa10.07□□□□□ -0.8
LIG1-215ENST00000597901 KRTAP10-1P60331 282 aa10.07□□□□□ -0.8
LIG1-215ENST00000597901 TCTE3Q8IZS6 198 aa10.07□□□□□ -0.8
LIG1-215ENST00000597901 MANBALQ9NQG1 85 aa10.07□□□□□ -0.8
LIG1-215ENST00000597901 ABCA13Q86UQ4 5058 aa10.07□□□□□ -0.8
LIG1-215ENST00000597901 SULT1A2P50226 295 aa10.06□□□□□ -0.8
LIG1-215ENST00000597901 XGP55808 180 aa10.06□□□□□ -0.8
LIG1-215ENST00000597901 PRR27Q6MZM9 219 aa10.06□□□□□ -0.8
LIG1-215ENST00000597901 DAZ4Q86SG3 579 aaKnown RBP10.06□□□□□ -0.8
LIG1-215ENST00000597901 OR10AG1Q8NH19 301 aa10.06□□□□□ -0.8
LIG1-215ENST00000597901 DERL1Q9BUN8 251 aa10.06□□□□□ -0.8
LIG1-215ENST00000597901 DAZ3Q9NR90 486 aaKnown RBP10.06□□□□□ -0.8
LIG1-215ENST00000597901 MUC21A0A0G2JKD1 596 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 TRBV10-1A0A0K0K1A3 114 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 MUC21A0A140T8X8 626 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 TEX46H3BTG2 121 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 SNAI2O43623 268 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 GCSHP23434 173 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 RAB4BP61018 213 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 LAGE3Q14657 143 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 C11orf52Q96A22 123 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 TM2D2Q9BX73 214 aa10.05□□□□□ -0.8
LIG1-215ENST00000597901 TRBV7-3A0A075B6L6 115 aa10.04□□□□□ -0.8
LIG1-215ENST00000597901 TRAV8-3A0A0A6YYJ7 113 aa10.04□□□□□ -0.8
LIG1-215ENST00000597901 OR5AL1P0C617 328 aa10.04□□□□□ -0.8
LIG1-215ENST00000597901 SSTP61278 116 aa10.04□□□□□ -0.8
LIG1-215ENST00000597901 RPL36AP83881 106 aaKnown RBP10.04□□□□□ -0.8
LIG1-215ENST00000597901 Q6ZNX1 250 aa10.04□□□□□ -0.8
LIG1-215ENST00000597901 RPL36ALQ969Q0 106 aaKnown RBP10.04□□□□□ -0.8
LIG1-215ENST00000597901 RAB19A4D1S5 217 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 EPM2AB3EWF7 344 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 IGLV2-8P01709 118 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 C1QBP02746 253 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 UBE2D3P61077 147 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 UBE2D2P62837 147 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 SPANXN1Q5VSR9 72 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 SLC51BQ86UW2 128 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 NIT1Q86X76 327 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 OR10G8Q8NGN5 311 aa10.03□□□□□ -0.8
LIG1-215ENST00000597901 IGLV5-52A0A0A0MRZ9 124 aa10.02□□□□□ -0.81
LIG1-215ENST00000597901 CENPWQ5EE01 88 aa10.02□□□□□ -0.81
LIG1-215ENST00000597901 TOR2AQ5JU69 321 aa10.02□□□□□ -0.81
LIG1-215ENST00000597901 Q8N814 137 aa10.02□□□□□ -0.81
LIG1-215ENST00000597901 NTN5Q8WTR8 489 aaPredicted RBP10.02□□□□□ -0.81
LIG1-215ENST00000597901 URGCP-MRPS24S4R325 110 aa10.02□□□□□ -0.81
LIG1-215ENST00000597901 DAZAP1Q96EP5 407 aaKnown RBP10.01□□□□□ -0.81
LIG1-215ENST00000597901 MED9Q9NWA0 146 aa10.01□□□□□ -0.81
LIG1-215ENST00000597901 KIF25-AS1Q9Y6Z4 181 aa10.01□□□□□ -0.81
LIG1-215ENST00000597901 F5H697 171 aa10□□□□□ -0.81
LIG1-215ENST00000597901 PDE6DO43924 150 aa10□□□□□ -0.81
LIG1-215ENST00000597901 GZMBP10144 247 aa10□□□□□ -0.81
LIG1-215ENST00000597901 MEF2BQ02080 365 aaPredicted RBP10□□□□□ -0.81
LIG1-215ENST00000597901 ZNF56Q15929 161 aa10□□□□□ -0.81
LIG1-215ENST00000597901 NEXN-AS1Q8NBZ9 246 aa10□□□□□ -0.81
LIG1-215ENST00000597901 KLK12Q9UKR0 248 aa10□□□□□ -0.81
LIG1-215ENST00000597901 A0A087WX48 190 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 C19orf71A6NCJ1 209 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 RBFOX3A6NFN3 312 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 IFNA1P01562 189 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 GNG4P50150 75 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 RPS20P60866 119 aaKnown RBP9.99□□□□□ -0.81
LIG1-215ENST00000597901 WFDC2Q14508 124 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 OR2D3Q8NGH3 330 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 FRZBQ92765 325 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 DNAJC30Q96LL9 226 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 VAX2Q9UIW0 290 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 COX11Q9Y6N1 276 aa9.99□□□□□ -0.81
LIG1-215ENST00000597901 TRBV6-8A0A0A6YYG3 113 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 TMEM262E9PQX1 116 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 IGLC6P0CF74 106 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 SMIM17P0DL12 118 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 ELOBQ15370 118 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 SMIM12Q96EX1 92 aa9.98□□□□□ -0.81
LIG1-215ENST00000597901 CHCHD7Q9BUK0 85 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms