RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 GAGE12BA1L429 117 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 GAGE7O76087 117 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 MGPP08493 103 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 GAGE12FP0CL80 117 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 GAGE12GP0CL81 117 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 GAGE12IP0CL82 117 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 FAM74A4Q5TZK3 123 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 FAM222AQ5U5X8 452 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 SAMD10Q9BYL1 202 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 ZMAT4Q9H898 229 aa10.47□□□□□ -0.73
VRK3-212ENST00000596814 RS1O15537 224 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 CRYGDP07320 174 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 CFAP126Q5VTH2 177 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 RNF185Q96GF1 192 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 C11orf68Q9H3H3 251 aaKnown RBP10.46□□□□□ -0.74
VRK3-212ENST00000596814 DKK2Q9UBU2 259 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 KIF25-AS1Q9Y6Z4 181 aa10.46□□□□□ -0.74
VRK3-212ENST00000596814 TRGV2A0A075B6R0 118 aa10.45□□□□□ -0.74
VRK3-212ENST00000596814 RAB4AP20338 218 aa10.45□□□□□ -0.74
VRK3-212ENST00000596814 LINC00612Q8N6U2 182 aa10.45□□□□□ -0.74
VRK3-212ENST00000596814 TRAV4A0A0B4J268 109 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 RHODO00212 210 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 DEFB130BP0DP73 79 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 DEFB130AP0DP74 79 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 KIAA1644Q3SXP7 199 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 MRPL51Q4U2R6 128 aaKnown RBP10.44□□□□□ -0.74
VRK3-212ENST00000596814 OR4C5Q8NGB2 326 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 CELA1Q9UNI1 258 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 TEX48A0A1B0GUV7 120 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 PHOX2AO14813 284 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 SPART-AS1P0CW21 52 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 LINC00315P59091 139 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 ZNF56Q15929 161 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 POM121L12Q8N7R1 296 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 TENM3Q9P273 2699 aa10.44□□□□□ -0.74
VRK3-212ENST00000596814 IGHV3-73A0A0B4J1V6 119 aa10.43□□□□□ -0.74
VRK3-212ENST00000596814 C1orf196B1AJZ1 125 aa10.43□□□□□ -0.74
VRK3-212ENST00000596814 IGHV3-53P01767 116 aa10.43□□□□□ -0.74
VRK3-212ENST00000596814 UFSP1Q6NVU6 142 aa10.43□□□□□ -0.74
VRK3-212ENST00000596814 C18orf15Q96N68 181 aa10.43□□□□□ -0.74
VRK3-212ENST00000596814 A0A0J9YWU9 116 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 D6R8Y8 96 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 NCR2O95944 276 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 DAD1P61803 113 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 ZFP2Q6ZN57 461 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 MRAP2Q96G30 205 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 ZNF479Q96JC4 524 aa10.42□□□□□ -0.74
VRK3-212ENST00000596814 TRAV26-2A0A0B4J265 109 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 F5H697 171 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 CKS2P33552 79 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 SUMO4Q6EEV6 95 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 ORMDL3Q8N138 153 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 MEGF8Q7Z7M0 2845 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 SMKR1H3BMG3 65 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 PPBPP02775 128 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 SRIP30626 198 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 U3KQK5 164 aa10.41□□□□□ -0.74
VRK3-212ENST00000596814 CIDEAO60543 219 aa10.4□□□□□ -0.74
VRK3-212ENST00000596814 RAB5BP61020 215 aa10.39□□□□□ -0.75
VRK3-212ENST00000596814 PRELID3AQ96N28 172 aa10.39□□□□□ -0.75
VRK3-212ENST00000596814 ALKBH7Q9BT30 221 aaPredicted RBP10.39□□□□□ -0.75
VRK3-212ENST00000596814 HUWE1Q7Z6Z7 4374 aaKnown RBP10.39□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BKO60814 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 GAS8-AS1O95177 125 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BJP06899 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 NHLRC4P0CG21 123 aaPredicted RBP10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BOP23527 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BBP33778 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BDP58876 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BCP62807 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST2H2BEQ16778 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BHQ93079 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BNQ99877 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 HIST1H2BMQ99879 126 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 TRGV4A0A0C4DH28 118 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 H7C1H1 209 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 GATA1P15976 413 aaPredicted RBP10.38□□□□□ -0.75
VRK3-212ENST00000596814 EDA2RQ9HAV5 297 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 DNAH9Q9NYC9 4486 aa10.38□□□□□ -0.75
VRK3-212ENST00000596814 M0QY20 66 aa10.37□□□□□ -0.75
VRK3-212ENST00000596814 C12orf74Q32Q52 190 aa10.37□□□□□ -0.75
VRK3-212ENST00000596814 Q6ZSN1 163 aa10.37□□□□□ -0.75
VRK3-212ENST00000596814 NRACQ8N912 160 aa10.37□□□□□ -0.75
VRK3-212ENST00000596814 LAMTOR2Q9Y2Q5 125 aa10.37□□□□□ -0.75
VRK3-212ENST00000596814 TNFRSF6BO95407 300 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 PPP1R17O96001 155 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 NPYP01303 97 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 ATP5G1P05496 136 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 OR10J3Q5JRS4 329 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 RPL39LQ96EH5 51 aaKnown RBP10.36□□□□□ -0.75
VRK3-212ENST00000596814 TMA7Q9Y2S6 64 aaKnown RBP10.36□□□□□ -0.75
VRK3-212ENST00000596814 K7EQD1 137 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 FHL2Q14192 279 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 C11orf45Q8TAV5 145 aa10.36□□□□□ -0.75
VRK3-212ENST00000596814 PRKDCP78527 4128 aaKnown RBP10.35□□□□□ -0.75
VRK3-212ENST00000596814 C18orf32Q8TCD1 76 aa10.35□□□□□ -0.75
VRK3-212ENST00000596814 TRBV6-4A0A1B0GX49 114 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 P0DMU3 169 aa10.34□□□□□ -0.75
VRK3-212ENST00000596814 FAM231AP0DMU4 169 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms