RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 MRPL16Q9NX20 251 aaKnown RBP9.83□□□□□ -0.84
CCDC40-209ENST00000573474 U3KQK5 164 aa9.83□□□□□ -0.84
CCDC40-209ENST00000573474 NOTCH1P46531 2555 aa9.83□□□□□ -0.84
CCDC40-209ENST00000573474 TRGV1A0A0A0MS02 117 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 PPBPP02775 128 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 CRYGDP07320 174 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 CKS2P33552 79 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 LINC00315P59091 139 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 ORMDL3Q8N138 153 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 POM121L12Q8N7R1 296 aa9.82□□□□□ -0.84
CCDC40-209ENST00000573474 NBEAL1Q6ZS30 2694 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 A0A087WWL8 130 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 D6R8Y8 96 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 RS1O15537 224 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 MGPP08493 103 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 EMP1P54849 157 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 DEFB121Q5J5C9 76 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 CFAP126Q5VTH2 177 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 MRAP2Q96G30 205 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 SAMD10Q9BYL1 202 aa9.81□□□□□ -0.84
CCDC40-209ENST00000573474 IGHV4-28A0A0C4DH34 117 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 S100A6P06703 90 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 NDUFA6P56556 154 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 Q0VG73 95 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 Q6ZTI0 123 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 PRELID3AQ96N28 172 aa9.8□□□□□ -0.84
CCDC40-209ENST00000573474 LYRM9A8MSI8 78 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 F5H697 171 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 SMKR1H3BMG3 65 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 RHODO00212 210 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 OR10J3Q5JRS4 329 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 FAM74A4Q5TZK3 123 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 UFSP1Q6NVU6 142 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 Q8NAQ8 132 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 OR4C5Q8NGB2 326 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 LAMTOR2Q9Y2Q5 125 aa9.79□□□□□ -0.84
CCDC40-209ENST00000573474 TRAV26-2A0A0B4J265 109 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 TRAV4A0A0B4J268 109 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 GAGE12BA1L429 117 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 GAGE7O76087 117 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 NCR2O95944 276 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 GAGE12FP0CL80 117 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 GAGE12GP0CL81 117 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 GAGE12IP0CL82 117 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 ZNF56Q15929 161 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 ZFP2Q6ZN57 461 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 SBSPONQ8IVN8 264 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 C18orf32Q8TCD1 76 aa9.78□□□□□ -0.84
CCDC40-209ENST00000573474 NBEAL2Q6ZNJ1 2754 aa9.77□□□□□ -0.84
CCDC40-209ENST00000573474 TRGV2A0A075B6R0 118 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 CIDEAO60543 219 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 PPP1R17O96001 155 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 GATA1P15976 413 aaPredicted RBP9.77□□□□□ -0.85
CCDC40-209ENST00000573474 COA6Q5JTJ3 125 aaKnown RBP9.77□□□□□ -0.85
CCDC40-209ENST00000573474 SUMO4Q6EEV6 95 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 BAGE3Q86Y29 109 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 LINC00612Q8N6U2 182 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 RETNQ9HD89 108 aa9.77□□□□□ -0.85
CCDC40-209ENST00000573474 GAS8-AS1O95177 125 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 TNFRSF6BO95407 300 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 NPYP01303 97 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 IQCJQ1A5X6 159 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 FAM222AQ5U5X8 452 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 NRACQ8N912 160 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 SPATA25Q9BR10 227 aa9.76□□□□□ -0.85
CCDC40-209ENST00000573474 IGHV3-73A0A0B4J1V6 119 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 H7C1H1 209 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 DEFB4AO15263 64 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 MRAPQ8TCY5 172 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 ZNF479Q96JC4 524 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 C18orf15Q96N68 181 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 TM2D3Q9BRN9 247 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 EDA2RQ9HAV5 297 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 DKK2Q9UBU2 259 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 DNHD1Q96M86 4753 aa9.75□□□□□ -0.85
CCDC40-209ENST00000573474 TEX48A0A1B0GUV7 120 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 C5orf52A6NGY3 159 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 M0QY20 66 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 SPART-AS1P0CW21 52 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 DEFB130BP0DP73 79 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 DEFB130AP0DP74 79 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 SNRPEP62304 92 aaKnown RBP9.74□□□□□ -0.85
CCDC40-209ENST00000573474 MAP1LC3AQ9H492 121 aa9.74□□□□□ -0.85
CCDC40-209ENST00000573474 LOC389332A0A1B0GUA5 103 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 PRSS47A8MTI9 375 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 IGHV3-53P01767 116 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 HOXA5P20719 270 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 Q6ZSN1 163 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 NIT1Q86X76 327 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 PRSS3P2Q8NHM4 247 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 RPL39LQ96EH5 51 aaKnown RBP9.73□□□□□ -0.85
CCDC40-209ENST00000573474 C20orf78Q9BR46 151 aa9.73□□□□□ -0.85
CCDC40-209ENST00000573474 SERF1AO75920 110 aa9.72□□□□□ -0.85
CCDC40-209ENST00000573474 C11orf68Q9H3H3 251 aaKnown RBP9.72□□□□□ -0.85
CCDC40-209ENST00000573474 ST20Q9HBF5 79 aa9.72□□□□□ -0.85
CCDC40-209ENST00000573474 NIT2Q9NQR4 276 aa9.72□□□□□ -0.85
CCDC40-209ENST00000573474 TRBV6-5A0A0K0K1A5 114 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 LINC00614P0C842 121 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 ESDP10768 282 aa9.71□□□□□ -0.86
CCDC40-209ENST00000573474 IFI27P40305 119 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms