RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 TMEM89A2RUT3 159 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 OVOL3O00110 214 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 CCL3L1P16619 93 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 C2orf83Q53S99 150 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 DYNLRB1Q9NP97 96 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 IGHV1-46P01743 117 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 SAA1P0DJI8 122 aaPredicted RBP8.3□□□□□ -1.08
CLK3-226ENST00000569406 TIRAPP58753 221 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 PATE2Q6UY27 113 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 LY6LH3BQJ8 138 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 AVPP01185 164 aa8.3□□□□□ -1.08
CLK3-226ENST00000569406 GAFA1Q96PS6 74 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 COL12A1Q99715 3063 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 TRAV8-3A0A0A6YYJ7 113 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 A0A0G2JNJ9 132 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 A0A0J9YY99 117 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 COX7A1P24310 79 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 LINC01559Q495D7 138 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 Q9UFV3 132 aa8.29□□□□□ -1.08
CLK3-226ENST00000569406 TRGV8A0A0C4DH27 118 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 M0R3E3 92 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 RNF7Q9UBF6 113 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 NACAE9PAV3 2078 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 IGHV3-30P01768 117 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 IGHV3-30-5P0DP03 117 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 SERP2Q8N6R1 65 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 MSRB1Q9NZV6 116 aa8.28□□□□□ -1.08
CLK3-226ENST00000569406 P0DMU3 169 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 FAM231AP0DMU4 169 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 FAM231CP0DMU5 169 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 CD40P25942 277 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 ZNF714Q96N38 554 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 OTORQ9NRC9 128 aa8.27□□□□□ -1.08
CLK3-226ENST00000569406 IGHV3-35A0A0C4DH35 117 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 DLX1P56177 255 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 ERCC8Q13216 396 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 VMA21Q3ZAQ7 101 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 PRIMA1Q86XR5 153 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 CLEC2BQ92478 149 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 TRIAP1O43715 76 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 SDIM1Q6ZPB5 146 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 FAM223AQ8IWN6 122 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 TMEM243Q9BU79 118 aa8.27□□□□□ -1.09
CLK3-226ENST00000569406 IGHV3OR16-8A0A075B7F1 116 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 H3BT86 120 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 ACYP1P07311 99 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 PRSS2P07478 247 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 RPL18AQ02543 176 aaKnown RBP8.26□□□□□ -1.09
CLK3-226ENST00000569406 SCGB3A1Q96QR1 104 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 TRAV12-3A0A0B4J271 114 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 CD69Q07108 199 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 LAGE3Q14657 143 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 TMEM14BQ9NUH8 114 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 NUP37Q8NFH4 326 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 TP53TG1Q9Y2A0 90 aa8.26□□□□□ -1.09
CLK3-226ENST00000569406 ANKHD1Q8IWZ3 2542 aaKnown RBP8.25□□□□□ -1.09
CLK3-226ENST00000569406 TRBV7-1A0A0A6YYK4 115 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 UPK2O00526 184 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 PRR25Q96S07 402 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 PTPRQQ9UMZ3 2332 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 COX6CP09669 75 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 CRIP1P50238 77 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 FHL2Q14192 279 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 C14orf178Q8N769 122 aaPredicted RBP8.25□□□□□ -1.09
CLK3-226ENST00000569406 TRAV12-2A0A075B6T6 113 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 C17orf100A8MU93 164 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 NDUFC2O95298 119 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 RNASE2P10153 161 aaKnown RBP8.25□□□□□ -1.09
CLK3-226ENST00000569406 PRCDQ00LT1 54 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 C8orf49Q96NF6 230 aa8.25□□□□□ -1.09
CLK3-226ENST00000569406 IGKV3D-7A0A0C4DH55 119 aa8.24□□□□□ -1.09
CLK3-226ENST00000569406 NDUFB3O43676 98 aa8.24□□□□□ -1.09
CLK3-226ENST00000569406 C5orf38Q86SI9 138 aa8.24□□□□□ -1.09
CLK3-226ENST00000569406 Q96MF0 132 aa8.24□□□□□ -1.09
CLK3-226ENST00000569406 ZNF561-AS1K7EIQ3 104 aa8.24□□□□□ -1.09
CLK3-226ENST00000569406 TMEM263Q8WUH6 116 aaKnown RBP8.24□□□□□ -1.09
CLK3-226ENST00000569406 A0A087WVE0 104 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 CXCL5P42830 114 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 SS18Q15532 418 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 MRGPRG-AS1Q2M3A8 158 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 UPK3BQ9BT76 320 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 CSMD2Q7Z408 3487 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 ATRXP46100 2492 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 A0A0B4J2C4 111 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 E7EUB6 86 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 SH2D1AO60880 128 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 IGLV2-11P01706 119 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 PMAIP1Q13794 54 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 FAM19A1Q7Z5A9 133 aa8.23□□□□□ -1.09
CLK3-226ENST00000569406 C9orf139Q6ZV77 190 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 SLC25A29Q8N8R3 303 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 CGB1A6NKQ9 187 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 EIF4EBP3O60516 100 aaPredicted RBP8.22□□□□□ -1.09
CLK3-226ENST00000569406 RPL27AP46776 148 aaKnown RBP8.22□□□□□ -1.09
CLK3-226ENST00000569406 RNF182Q8N6D2 247 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 CELSR2Q9HCU4 2923 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 TRAV26-2A0A0B4J265 109 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 COX6B1P14854 86 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 BSPH1Q075Z2 132 aa8.22□□□□□ -1.09
CLK3-226ENST00000569406 MUSTN1Q8IVN3 82 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms