RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TRBV7-3A0A075B6L6 115 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 CDC34P49427 236 aaPredicted RBP10.87□□□□□ -0.67
VPS29-204ENST00000548259 RAB2AP61019 212 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 SUMO1P63165 101 aaKnown RBP10.87□□□□□ -0.67
VPS29-204ENST00000548259 ENHOQ6UWT2 76 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 PPP1R1CQ8WVI7 109 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 PHLDA3Q9Y5J5 127 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 PKHD1L1Q86WI1 4243 aa10.87□□□□□ -0.67
VPS29-204ENST00000548259 TRBV6-8A0A0A6YYG3 113 aa10.86□□□□□ -0.67
VPS29-204ENST00000548259 H3BVH4 76 aa10.86□□□□□ -0.67
VPS29-204ENST00000548259 PRSS1P07477 247 aa10.86□□□□□ -0.67
VPS29-204ENST00000548259 TMEM167BQ9NRX6 74 aa10.86□□□□□ -0.67
VPS29-204ENST00000548259 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.86□□□□□ -0.67
VPS29-204ENST00000548259 A0A087WWL8 130 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 STAG3L2P0CL84 134 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 STAG3L3P0CL85 134 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 TPT1P13693 172 aaKnown RBP10.85□□□□□ -0.67
VPS29-204ENST00000548259 UBE2D3P61077 147 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 UBE2D2P62837 147 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 CLRN3Q8NCR9 226 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 SFRP2Q96HF1 295 aa10.85□□□□□ -0.67
VPS29-204ENST00000548259 ARMS2P0C7Q2 107 aa10.84□□□□□ -0.67
VPS29-204ENST00000548259 GCHFRP30047 84 aa10.84□□□□□ -0.67
VPS29-204ENST00000548259 SDIM1Q6ZPB5 146 aa10.84□□□□□ -0.67
VPS29-204ENST00000548259 RNF185Q96GF1 192 aa10.84□□□□□ -0.67
VPS29-204ENST00000548259 CHCHD5Q9BSY4 110 aa10.84□□□□□ -0.67
VPS29-204ENST00000548259 M0R381 172 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 MPC2O95563 127 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 MPV17L2Q567V2 206 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 DNLZQ5SXM8 178 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 ZFP82Q8N141 532 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 ENKURQ8TC29 256 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 SUN5Q8TC36 379 aa10.83□□□□□ -0.68
VPS29-204ENST00000548259 LRP2P98164 4655 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.82□□□□□ -0.68
VPS29-204ENST00000548259 CXorf1O96002 111 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 MBP02144 154 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 TMEM97Q5BJF2 176 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 C7orf33Q8WU49 177 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 RAB24Q969Q5 203 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 ARL2-SNX15V9GYD0 113 aa10.82□□□□□ -0.68
VPS29-204ENST00000548259 M0R036 132 aa10.81□□□□□ -0.68
VPS29-204ENST00000548259 PTTG1O95997 202 aa10.81□□□□□ -0.68
VPS29-204ENST00000548259 IFNA7P01567 189 aa10.81□□□□□ -0.68
VPS29-204ENST00000548259 OR10G8Q8NGN5 311 aa10.81□□□□□ -0.68
VPS29-204ENST00000548259 AP5S1Q9NUS5 200 aa10.81□□□□□ -0.68
VPS29-204ENST00000548259 RNF213Q63HN8 5207 aa10.8□□□□□ -0.68
VPS29-204ENST00000548259 IGHV3-64A0A075B6Q5 118 aa10.8□□□□□ -0.68
VPS29-204ENST00000548259 KRBOX1C9JBD0 128 aa10.8□□□□□ -0.68
VPS29-204ENST00000548259 H2BFSP57053 126 aa10.8□□□□□ -0.68
VPS29-204ENST00000548259 CIRBPQ14011 172 aaKnown RBP10.8□□□□□ -0.68
VPS29-204ENST00000548259 TRAV34A0A0B4J273 112 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 A0A1W2PRE2 83 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 GRIFINA4D1Z8 144 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 PANO1I0J062 215 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 RAB4BP61018 213 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 CNBPP62633 177 aaKnown RBP10.79□□□□□ -0.68
VPS29-204ENST00000548259 FAM162BQ5T6X4 162 aa10.79□□□□□ -0.68
VPS29-204ENST00000548259 ACTR3CQ9C0K3 210 aaPredicted RBP10.79□□□□□ -0.68
VPS29-204ENST00000548259 hDV102S1A0JD36 115 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 SSNA1O43805 119 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 ZNF56Q15929 161 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 NKX6-2Q9C056 277 aaPredicted RBP10.78□□□□□ -0.68
VPS29-204ENST00000548259 WFDC1Q9HC57 220 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 PRR34Q9NV39 138 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 ZFP30Q9Y2G7 519 aa10.78□□□□□ -0.68
VPS29-204ENST00000548259 A0A087WYN8 130 aa10.77□□□□□ -0.69
VPS29-204ENST00000548259 SERF2P84101 59 aa10.77□□□□□ -0.69
VPS29-204ENST00000548259 Q86TA4 180 aa10.77□□□□□ -0.69
VPS29-204ENST00000548259 LINC00269Q8N2A0 174 aa10.77□□□□□ -0.69
VPS29-204ENST00000548259 PSMG3Q9BT73 122 aaPredicted RBP10.77□□□□□ -0.69
VPS29-204ENST00000548259 A6NHS1 94 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 INMT-MINDY4F8WBC2 141 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 PEX7O00628 323 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 SH2D1AO60880 128 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 CLPSL2Q6UWE3 100 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 HIST1H2BAQ96A08 127 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 LINC01600Q96MT4 127 aa10.76□□□□□ -0.69
VPS29-204ENST00000548259 RBX1P62877 108 aa10.75□□□□□ -0.69
VPS29-204ENST00000548259 NEXN-AS1Q8NBZ9 246 aa10.75□□□□□ -0.69
VPS29-204ENST00000548259 TRBV25-1A0A075B6N4 114 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 TMSB15BA0A087X1C1 80 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 TRAV8-4A0A0B4J246 113 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 P01737 135 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 LINC01559Q495D7 138 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 TNFSF18Q9UNG2 199 aa10.74□□□□□ -0.69
VPS29-204ENST00000548259 PHOX2AO14813 284 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 GZMBP10144 247 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 ATP6V0CP27449 155 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 CRIP1P50238 77 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 UBE2G1P62253 170 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 GAGE6Q13070 117 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 COX8CQ7Z4L0 72 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 SPACA4Q8TDM5 124 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 FMC1Q96HJ9 113 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 DERL1Q9BUN8 251 aa10.73□□□□□ -0.69
VPS29-204ENST00000548259 F5H697 171 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 REG3AQ06141 175 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 PRR27Q6MZM9 219 aa10.72□□□□□ -0.69
VPS29-204ENST00000548259 KRTAP26-1Q6PEX3 210 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms