RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 AHCTF1Q8WYP5 2266 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 ATP6V0E1O15342 81 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 RNF138Q8WVD3 245 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 FER1L5A0AVI2 2057 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 ZNF22P17026 224 aaPredicted RBP6.75□□□□□ -1.33
YBX3-208ENST00000540447 ARFGEF3Q5TH69 2177 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 NACAE9PAV3 2078 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 PSPHP1O15172 72 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 PYGO1Q9Y3Y4 419 aa6.75□□□□□ -1.33
YBX3-208ENST00000540447 DSCAML1Q8TD84 2053 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 TMEM223A0PJW6 202 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 NDUFA4O00483 81 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 EML6Q6ZMW3 1958 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 DIRC1Q969H9 104 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 FGF23Q9GZV9 251 aaPredicted RBP6.74□□□□□ -1.33
YBX3-208ENST00000540447 DOPEY2Q9Y3R5 2298 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 IGHV4OR15-8A0A075B7B6 117 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 A0A087WW49 117 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 PIP4P2Q8N4L2 257 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 LINC00311Q8N616 119 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 C11orf44Q8N8P7 122 aa6.74□□□□□ -1.33
YBX3-208ENST00000540447 ANGP03950 147 aaKnown RBP6.74□□□□□ -1.33
YBX3-208ENST00000540447 TMEM263Q8WUH6 116 aaKnown RBP6.74□□□□□ -1.33
YBX3-208ENST00000540447 IGKV1OR2-108A0A075B7D4 117 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 ETDCA0A1B0GVM5 59 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 C20orf203Q8NBC4 194 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 SDK2Q58EX2 2172 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 A0A087WVE0 104 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 PRR19A6NJB7 356 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 MDS2Q8NDY4 140 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 TRBV7-6A0A0J9YX20 115 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 EBI3Q14213 229 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 ZNF672Q499Z4 452 aaPredicted RBP6.73□□□□□ -1.33
YBX3-208ENST00000540447 U3KQK5 164 aa6.73□□□□□ -1.33
YBX3-208ENST00000540447 MED14OSP0DP75 135 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 B3GALT5-AS1P59052 145 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 ZFAND3Q9H8U3 227 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 A8MZ25 164 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 LINC00308Q8TCZ7 52 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 ZNF524Q96C55 264 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 CCL19Q99731 98 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 C5orf67F2Z3F1 127 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 RBBP6Q7Z6E9 1792 aaKnown RBP6.72□□□□□ -1.33
YBX3-208ENST00000540447 G3V318 75 aa6.72□□□□□ -1.33
YBX3-208ENST00000540447 K7ERS5 55 aa6.71□□□□□ -1.33
YBX3-208ENST00000540447 CRIP2P52943 208 aaPredicted RBP6.71□□□□□ -1.33
YBX3-208ENST00000540447 IGKV4-1P06312 121 aa6.71□□□□□ -1.34
YBX3-208ENST00000540447 UBE2D3P61077 147 aa6.71□□□□□ -1.34
YBX3-208ENST00000540447 UBE2D2P62837 147 aa6.71□□□□□ -1.34
YBX3-208ENST00000540447 TRBV7-7A0A0K0K1E9 115 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 F8WDY8 70 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 IGKV1-17P01599 117 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 SHANK1Q9Y566 2161 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 PRAC2D3DTV9 90 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 I3L2K1 104 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 ZGRF1Q86YA3 2104 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 GREB1LQ9C091 1923 aaPredicted RBP6.7□□□□□ -1.34
YBX3-208ENST00000540447 BRCA1P38398 1863 aaKnown RBP6.7□□□□□ -1.34
YBX3-208ENST00000540447 IGHV7-4-1A0A0J9YVY3 117 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 H3BUX3 64 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 MYCNOSP40205 109 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.7□□□□□ -1.34
YBX3-208ENST00000540447 IGLV2-14P01704 120 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 CRYGAP11844 174 aa6.7□□□□□ -1.34
YBX3-208ENST00000540447 COX7BP24311 80 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 SPTBN1Q01082 2364 aaKnown RBP6.69□□□□□ -1.34
YBX3-208ENST00000540447 PRYO14603 147 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 C9orf47Q6ZRZ4 202 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 ZNF295-AS1Q8N0V1 137 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 Q6ZS46 218 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 CASC2Q6XLA1 102 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 KIR2DL5BQ8NHK3 375 aa6.69□□□□□ -1.34
YBX3-208ENST00000540447 H0Y9J4 135 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 DOCK7Q96N67 2140 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 KIAA1549Q9HCM3 1950 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 CEMP1Q6PRD7 247 aaPredicted RBP6.68□□□□□ -1.34
YBX3-208ENST00000540447 C9orf85Q96MD7 179 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 TSC2P49815 1807 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 OBSL1O75147 1896 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 NRXN2Q9P2S2 1712 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 A0A096LPF7 62 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 K7EIM0 57 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 GATA4P43694 442 aa6.68□□□□□ -1.34
YBX3-208ENST00000540447 PSCAO43653 123 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 SAA4P35542 130 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 WT1P19544 449 aaPredicted RBP6.67□□□□□ -1.34
YBX3-208ENST00000540447 UBE2D1P51668 147 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 DEFB112Q30KQ8 113 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 K7EQD1 137 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 NDUFA1O15239 70 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 CCKP06307 115 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 ZNF80P51504 273 aaPredicted RBP6.67□□□□□ -1.34
YBX3-208ENST00000540447 IGHV4-59P01825 116 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 NANOS2P60321 138 aaKnown RBP6.67□□□□□ -1.34
YBX3-208ENST00000540447 BRD3OSQ6XYD6 125 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 FAM30AQ9NZY2 134 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 SPAG11BQ08648 103 aa6.67□□□□□ -1.34
YBX3-208ENST00000540447 WNK2Q9Y3S1 2297 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 TRBV10-1A0A0K0K1A3 114 aa6.66□□□□□ -1.34
YBX3-208ENST00000540447 LY6DQ14210 128 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms