RNA–Protein interactions for RNA: ENST00000533440.1

NXF1-215, Transcript of nuclear RNA export factor 1, human

TSL 2

Gene NXF1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-215	ENST00000533440	GNG5	P63218	68 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	PRR3	P79522	188 aa	Known RBP	4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	CNPY1	Q3B7I2	92 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	DPH3	Q96FX2	82 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	SGK494	Q96LW2	274 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	PRR34	Q9NV39	138 aa		4.89	□□□□□ -1.63
NXF1-215	ENST00000533440	TRBV6-8	A0A0A6YYG3	113 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	TRBV10-1	A0A0K0K1A3	114 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	SERTM2	A0A1B0GWG4	89 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	C17orf112	F2Z3M2	114 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	EIF3G	O75821	320 aa	Known RBP eCLIP	4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	SLPI	P03973	132 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	S100A5	P33763	92 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	SMUG1	Q53HV7	270 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	REG3G	Q6UW15	175 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	SPINK6	Q6UWN8	80 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	IL36B	Q9NZH7	164 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	PSG8	Q9UQ74	426 aa		4.88	□□□□□ -1.63
NXF1-215	ENST00000533440	TRBV7-3	A0A075B6L6	115 aa		4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	CENPX	A8MT69	81 aa		4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	S100A4	P26447	101 aa	Known RBP	4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	RPL36A	P83881	106 aa	Known RBP	4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	TRIQK	Q629K1	86 aa		4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	PQLC2	Q6ZP29	291 aa		4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	OR10G8	Q8NGN5	311 aa		4.87	□□□□□ -1.63
NXF1-215	ENST00000533440	RPL36AL	Q969Q0	106 aa	Known RBP	4.87	□□□□□ -1.63
NXF1-215	ENST00000533440		A0A087WWL8	130 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	hDV102S1	A0JD36	115 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	TCRA	P04437	139 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	PKIA	P61925	76 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	SRSF9	Q13242	221 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	ZFP69	Q49AA0	526 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	DNLZ	Q5SXM8	178 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	FAM74A4	Q5TZK3	123 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	SFRP2	Q96HF1	295 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	SDHC	Q99643	169 aa	Predicted RBP	4.86	□□□□□ -1.63
NXF1-215	ENST00000533440	SEC22C	Q9BRL7	303 aa		4.86	□□□□□ -1.63
NXF1-215	ENST00000533440		H3BVH4	76 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	NOL3	O60936	208 aa	Known RBP	4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	PTTG1	O95997	202 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	TCRB	P04435	133 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	ARMS2	P0C7Q2	107 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	FLI1	Q01543	452 aa	Predicted RBP	4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	CLPSL2	Q6UWE3	100 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	LINC00269	Q8N2A0	174 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	C5orf17	Q8NAS9	161 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	OR11H4	Q8NGC9	324 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	GTSF1	Q8WW33	167 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	CHCHD5	Q9BSY4	110 aa		4.85	□□□□□ -1.63
NXF1-215	ENST00000533440	RBM38	Q9H0Z9	239 aa	Known RBP	4.85	□□□□□ -1.63
NXF1-215	ENST00000533440		A0A0U1RQV1	116 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	FABP5P3	A8MUU1	101 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440		H0YIZ8	118 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440		K7EQM0	130 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	RBX1	P62877	108 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	SAPCD1	Q5SSQ6	148 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	NTM-AS1	Q6ZSK4	140 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	PRNT	Q86SH4	94 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	NEXN-AS1	Q8NBZ9	246 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	SUN5	Q8TC36	379 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	AP5S1	Q9NUS5	200 aa		4.84	□□□□□ -1.63
NXF1-215	ENST00000533440	TRAV6	A0A075B6T7	132 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	MUC21	A0A0G2JKD1	596 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440		B4DEV8	164 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	KRBOX1	C9JBD0	128 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	PLA2G10	O15496	165 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	NDUFS6	O75380	124 aa	Known RBP	4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	IL7	P13232	177 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	COX6A2	Q02221	97 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	MAJIN	Q3KP22	176 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	PRR27	Q6MZM9	219 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	VAX2	Q9UIW0	290 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	EPDR1	Q9UM22	224 aa		4.83	□□□□□ -1.64
NXF1-215	ENST00000533440	IGLV10-54	A0A075B6I4	117 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	TRAV8-4	A0A0B4J246	113 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440		A0A1W2PPV4	95 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440		M0R381	172 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	HMGB3	O15347	200 aa	Known RBP	4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	LYRM1	O43325	122 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440		P01737	135 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	ARL14EPL	P0DKL9	152 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	GZMB	P10144	247 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	RAB4B	P61018	213 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	SUMO1	P63165	101 aa	Known RBP	4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	REG3A	Q06141	175 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	TMEM97	Q5BJF2	176 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	STPG4	Q8N801	248 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	PRSS3P2	Q8NHM4	247 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	NUDT15	Q9NV35	164 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	PHLDA3	Q9Y5J5	127 aa		4.82	□□□□□ -1.64
NXF1-215	ENST00000533440	IGKV2-24	A0A0C4DH68	120 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	GRIFIN	A4D1Z8	144 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440		H7C1H1	209 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	STAG3L2	P0CL84	134 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	STAG3L3	P0CL85	134 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	TPT1	P13693	172 aa	Known RBP	4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	CRIP1	P50238	77 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	RAB2A	P61019	212 aa		4.81	□□□□□ -1.64
NXF1-215	ENST00000533440	GAGE6	Q13070	117 aa		4.81	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 1749.1 ms