RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CRYBG3Q68DQ2 2970 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 PAPPA-AS1Q5QFB9 102 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 Q6YL49 198 aa15.8■□□□□ 0.12
VPS28-205ENST00000526204 BBC3Q96PG8 261 aaPredicted RBP15.8■□□□□ 0.12
VPS28-205ENST00000526204 EPG5Q9HCE0 2579 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 COX6B1P14854 86 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 RNF151Q2KHN1 245 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 NEGR1Q7Z3B1 354 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 TMEM141Q96I45 108 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 IGHV1OR15-1A0A075B7D0 117 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 FSHBP01225 129 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 TP53TG1Q9Y2A0 90 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 MUC4Q99102 2169 aa15.79■□□□□ 0.12
VPS28-205ENST00000526204 TRAV12-2A0A075B6T6 113 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 TRBV27A0A0K0K1C4 114 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 IGIPA6NJ69 53 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 IGKV3-20P01619 116 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 Q8N1Y9 231 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 RNF152Q8N8N0 203 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 MDFICQ9P1T7 246 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 ZNF462Q96JM2 2506 aa15.78■□□□□ 0.12
VPS28-205ENST00000526204 SDHAF1A6NFY7 115 aa15.77■□□□□ 0.12
VPS28-205ENST00000526204 HOXD3P31249 432 aaPredicted RBP15.77■□□□□ 0.12
VPS28-205ENST00000526204 ZNF702PQ9H963 129 aa15.77■□□□□ 0.12
VPS28-205ENST00000526204 K7ERJ3 54 aa15.77■□□□□ 0.11
VPS28-205ENST00000526204 FOXI2Q6ZQN5 318 aa15.77■□□□□ 0.11
VPS28-205ENST00000526204 TIMM17AQ99595 171 aa15.77■□□□□ 0.11
VPS28-205ENST00000526204 PCP4P48539 62 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 RIPPLY3P57055 190 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 MAPK1IP1LQ8NDC0 245 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 PRADC1Q9BSG0 188 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 CRYGDP07320 174 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 PMVKQ15126 192 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 SPINK13Q1W4C9 94 aa15.76■□□□□ 0.11
VPS28-205ENST00000526204 TRBV7-3A0A075B6L6 115 aa15.75■□□□□ 0.11
VPS28-205ENST00000526204 FAM74A4Q5TZK3 123 aa15.75■□□□□ 0.11
VPS28-205ENST00000526204 TSHBP01222 138 aa15.74■□□□□ 0.11
VPS28-205ENST00000526204 C12orf74Q32Q52 190 aa15.74■□□□□ 0.11
VPS28-205ENST00000526204 VPS25Q9BRG1 176 aa15.74■□□□□ 0.11
VPS28-205ENST00000526204 CELSR2Q9HCU4 2923 aa15.74■□□□□ 0.11
VPS28-205ENST00000526204 TRGV11A0A075B6L2 103 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 M0QY20 66 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 IGHV4-31P0DP07 118 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 SCGB2A2Q13296 93 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 ZNF56Q15929 161 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 CSPG4Q6UVK1 2322 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 HERVK_113P61574 105 aa15.73■□□□□ 0.11
VPS28-205ENST00000526204 TRPT1Q86TN4 253 aaKnown RBP15.73■□□□□ 0.11
VPS28-205ENST00000526204 IGLV4-69A0A075B6H9 119 aa15.72■□□□□ 0.11
VPS28-205ENST00000526204 IGLL5B9A064 214 aa15.72■□□□□ 0.11
VPS28-205ENST00000526204 AMTNQ6UX39 209 aa15.72■□□□□ 0.11
VPS28-205ENST00000526204 DUX5Q96PT3 197 aa15.72■□□□□ 0.11
VPS28-205ENST00000526204 ZNF815PA8K554 130 aa15.71■□□□□ 0.11
VPS28-205ENST00000526204 HOXA3O43365 443 aaPredicted RBP15.71■□□□□ 0.11
VPS28-205ENST00000526204 RHOHQ15669 191 aa15.71■□□□□ 0.11
VPS28-205ENST00000526204 TCTEX1D4Q5JR98 221 aa15.71■□□□□ 0.11
VPS28-205ENST00000526204 A0A1B0GWB2 263 aa15.71■□□□□ 0.11
VPS28-205ENST00000526204 RPL39P62891 51 aaKnown RBP15.71■□□□□ 0.11
VPS28-205ENST00000526204 C11orf86A6NJI1 115 aa15.7■□□□□ 0.1
VPS28-205ENST00000526204 ZNF876PQ49A33 203 aa15.7■□□□□ 0.1
VPS28-205ENST00000526204 MAP1AP78559 2803 aaPredicted RBP15.7■□□□□ 0.1
VPS28-205ENST00000526204 NSUN5P1Q3KNT7 163 aa15.7■□□□□ 0.1
VPS28-205ENST00000526204 BEX4Q9NWD9 120 aaPredicted RBP15.7■□□□□ 0.1
VPS28-205ENST00000526204 ZNF256Q9Y2P7 627 aaPredicted RBP15.7■□□□□ 0.1
VPS28-205ENST00000526204 CD300EQ496F6 205 aaPredicted RBP15.69■□□□□ 0.1
VPS28-205ENST00000526204 ZNF843Q8N446 348 aa15.69■□□□□ 0.1
VPS28-205ENST00000526204 ZNF479Q96JC4 524 aa15.69■□□□□ 0.1
VPS28-205ENST00000526204 CSMD2Q7Z408 3487 aa15.69■□□□□ 0.1
VPS28-205ENST00000526204 MORN3Q6PF18 240 aaPredicted RBP15.68■□□□□ 0.1
VPS28-205ENST00000526204 SCGB1D4Q6XE38 83 aa15.68■□□□□ 0.1
VPS28-205ENST00000526204 TMEM238LA0A1B0GVL6 79 aa15.67■□□□□ 0.1
VPS28-205ENST00000526204 A6NJY4 79 aa15.67■□□□□ 0.1
VPS28-205ENST00000526204 SAP30O75446 220 aa15.67■□□□□ 0.1
VPS28-205ENST00000526204 Q8N2B8 174 aa15.67■□□□□ 0.1
VPS28-205ENST00000526204 UBR5O95071 2799 aaPredicted RBP15.67■□□□□ 0.1
VPS28-205ENST00000526204 TRAV2A0A0B4J234 112 aa15.66■□□□□ 0.1
VPS28-205ENST00000526204 DEFB104AQ8WTQ1 72 aa15.66■□□□□ 0.1
VPS28-205ENST00000526204 A8MTW9 85 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 G3V4G9 280 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 I3L3M4 83 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 RRN3P1Q2M238 152 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 FAM208BQ5VWN6 2430 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 LRRK2Q5S007 2527 aa15.65■□□□□ 0.1
VPS28-205ENST00000526204 EMP1P54849 157 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 SLURP1P55000 103 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 LRRC75A-AS1Q8N1F1 130 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 EDA2RQ9HAV5 297 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 PEMTQ9UBM1 199 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 SRSF9Q13242 221 aaKnown RBP eCLIP15.64■□□□□ 0.09
VPS28-205ENST00000526204 DEFB113Q30KQ7 82 aa15.64■□□□□ 0.09
VPS28-205ENST00000526204 DEFB131AP59861 70 aa15.63■□□□□ 0.09
VPS28-205ENST00000526204 TMEM170BQ5T4T1 132 aa15.63■□□□□ 0.09
VPS28-205ENST00000526204 KLHL30-AS1Q8NEE0 82 aa15.63■□□□□ 0.09
VPS28-205ENST00000526204 KNCNA6PVL3 124 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 NFE4Q86UQ8 179 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 C20orf203Q8NBC4 194 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 PLEKHB2Q96CS7 222 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 F8W1H4 67 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 H3BMM0 161 aa15.62■□□□□ 0.09
VPS28-205ENST00000526204 Q5PR19 223 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms