RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 ARMS2P0C7Q2 107 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 CACNG7P62955 275 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 ZNF415Q09FC8 603 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 RIGQ13278 110 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 COX19Q49B96 90 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 MRPL54Q6P161 138 aaKnown RBP12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 WDR73Q6P4I2 378 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 C9orf85Q96MD7 179 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 TP53TG3Q9ULZ0 132 aa12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 TIMM8BQ9Y5J9 83 aaPredicted RBP12.68□□□□□ -0.38
SQSTM1-209ENST00000504627 PLAC8L1A1L4L8 177 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 S100A8P05109 93 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 ATP5G1P05496 136 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 HBBP68871 147 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 LGALS9BQ3B8N2 356 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 ZNF493Q6ZR52 646 aa12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 TMEM263Q8WUH6 116 aaKnown RBP12.67□□□□□ -0.38
SQSTM1-209ENST00000504627 NXPH4O95158 308 aa12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 RAB5AP20339 215 aa12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 OR10AG1Q8NH19 301 aa12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 NOP10Q9NPE3 64 aaKnown RBP12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 PHLDA3Q9Y5J5 127 aa12.66□□□□□ -0.38
SQSTM1-209ENST00000504627 MUC4Q99102 2169 aa12.65□□□□□ -0.38
SQSTM1-209ENST00000504627 SPINK4O60575 86 aa12.65□□□□□ -0.38
SQSTM1-209ENST00000504627 ZFP82Q8N141 532 aa12.65□□□□□ -0.38
SQSTM1-209ENST00000504627 C11orf72Q8NBR9 251 aa12.65□□□□□ -0.38
SQSTM1-209ENST00000504627 RNASE8Q8TDE3 154 aaKnown RBP12.65□□□□□ -0.38
SQSTM1-209ENST00000504627 DNAH17Q9UFH2 4485 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 PRSS29PA6NIE9 313 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 NUDT3O95989 172 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 MT-ND6P03923 174 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 SPANXN1Q5VSR9 72 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 GATD1Q8NB37 220 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 MDFICQ9P1T7 246 aa12.64□□□□□ -0.39
SQSTM1-209ENST00000504627 HLA-DQA1P01909 254 aa12.63□□□□□ -0.39
SQSTM1-209ENST00000504627 SYT8Q8NBV8 401 aa12.63□□□□□ -0.39
SQSTM1-209ENST00000504627 SPXQ9BT56 116 aa12.63□□□□□ -0.39
SQSTM1-209ENST00000504627 GNB1LQ9BYB4 327 aa12.63□□□□□ -0.39
SQSTM1-209ENST00000504627 FAT2Q9NYQ8 4349 aa12.63□□□□□ -0.39
SQSTM1-209ENST00000504627 SNURFLB1AK76 121 aa12.62□□□□□ -0.39
SQSTM1-209ENST00000504627 RTL8CO15255 209 aa12.62□□□□□ -0.39
SQSTM1-209ENST00000504627 PTH2Q96A98 100 aa12.62□□□□□ -0.39
SQSTM1-209ENST00000504627 TRGC1P0CF51 173 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 NTF3P20783 257 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 RPS10P46783 165 aaKnown RBP12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 CAMPP49913 170 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 TWIST1Q15672 202 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 PIK3CD-AS1Q5SR53 167 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 TMEM136Q6ZRR5 245 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 GSN-AS1Q9NRJ2 163 aa12.61□□□□□ -0.39
SQSTM1-209ENST00000504627 MUC21A0A0G2JKD1 596 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 MUC21A0A140T8X8 626 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 M0R2P5 195 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 M0R381 172 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 Q6ZR54 194 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 AP1S3Q96PC3 154 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 HERC2O95714 4834 aa12.6□□□□□ -0.39
SQSTM1-209ENST00000504627 GAGE12BA1L429 117 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 GAGE7O76087 117 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 GAGE12FP0CL80 117 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 GAGE12GP0CL81 117 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 GAGE12IP0CL82 117 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 CCL18P55774 89 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 RAB4BP61018 213 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 SMIM15Q7Z3B0 74 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 TMEM191AQ9H0A3 160 aa12.59□□□□□ -0.39
SQSTM1-209ENST00000504627 DAZ2Q13117 558 aaKnown RBP12.58□□□□□ -0.4
SQSTM1-209ENST00000504627 C1orf134Q5TEV5 83 aa12.58□□□□□ -0.4
SQSTM1-209ENST00000504627 A0A1B0GVY2 172 aa12.57□□□□□ -0.4
SQSTM1-209ENST00000504627 DMRTA1Q5VZB9 504 aa12.57□□□□□ -0.4
SQSTM1-209ENST00000504627 MSRB1Q9NZV6 116 aa12.57□□□□□ -0.4
SQSTM1-209ENST00000504627 TRAPPC1Q9Y5R8 145 aa12.57□□□□□ -0.4
SQSTM1-209ENST00000504627 SSTP61278 116 aa12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 ZNF876PQ49A33 203 aa12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 FRZBQ92765 325 aa12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 MRPL18Q9H0U6 180 aaKnown RBP12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 KIAA1109Q2LD37 5005 aa12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 NACAE9PAV3 2078 aa12.56□□□□□ -0.4
SQSTM1-209ENST00000504627 TRAV26-1A0A087WT03 109 aa12.55□□□□□ -0.4
SQSTM1-209ENST00000504627 LINC00612Q8N6U2 182 aa12.55□□□□□ -0.4
SQSTM1-209ENST00000504627 RASL10AQ92737 203 aa12.55□□□□□ -0.4
SQSTM1-209ENST00000504627 A0A0J9YY99 117 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 A8MWV9 139 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 APCSP02743 223 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 TRGC2P03986 189 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 EVI2AP22794 236 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 SLAQ13239 276 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 FAM104BQ5XKR9 115 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 DPH3P1Q9H4G8 78 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 LINC00588Q9Y4M8 146 aa12.54□□□□□ -0.4
SQSTM1-209ENST00000504627 TRGV2A0A075B6R0 118 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 C1orf196B1AJZ1 125 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 PHOX2AO14813 284 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 SMIM17P0DL12 118 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 FABP9Q0Z7S8 132 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 Q6ZTI0 123 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 ZNRF2Q8NHG8 242 aa12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 MRPL16Q9NX20 251 aaKnown RBP12.53□□□□□ -0.4
SQSTM1-209ENST00000504627 PKHD1P08F94 4074 aa12.52□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 99.5 ms