RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 IGHV1OR15-1A0A075B7D0 117 aa8.94□□□□□ -0.98
NUP54-202ENST00000502850 F8VRH5 84 aa8.94□□□□□ -0.98
NUP54-202ENST00000502850 PTTG1IPP53801 180 aa8.94□□□□□ -0.98
NUP54-202ENST00000502850 HHLA3Q9XRX5 114 aa8.94□□□□□ -0.98
NUP54-202ENST00000502850 LINC01619G3V211 115 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 TAX1BP3O14907 124 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 LY6G6DO95868 133 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 C4orf3Q8WVX3 66 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 KIF25-AS1Q9Y6Z4 181 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 ZFHX3Q15911 3703 aa8.93□□□□□ -0.98
NUP54-202ENST00000502850 IGHV3-16A0A0C4DH30 117 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 VAMP3Q15836 100 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 TCTEX1D4Q5JR98 221 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 ZC2HC1BQ5TFG8 222 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 WFDC12Q8WWY7 111 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 RPL39LQ96EH5 51 aaKnown RBP8.92□□□□□ -0.98
NUP54-202ENST00000502850 KIR2DL4Q99706 377 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 CSTL1Q9H114 145 aa8.92□□□□□ -0.98
NUP54-202ENST00000502850 MRPL35Q9NZE8 188 aaKnown RBP8.92□□□□□ -0.98
NUP54-202ENST00000502850 TRBV6-5A0A0K0K1A5 114 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 VCYO14598 125 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 C2orf66Q6UXQ4 117 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 ADAMTSL5Q6ZMM2 481 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 ERASQ7Z444 233 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 TMEM160Q9NX00 188 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 CYSLTR1Q9Y271 337 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 CSPG4Q6UVK1 2322 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 H3BRM9 83 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 LINC00315P59091 139 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 PAPPA-AS1Q5QFB9 102 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 SUMO4Q6EEV6 95 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 PCP2Q8IVA1 136 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 DUX5Q96PT3 197 aa8.91□□□□□ -0.98
NUP54-202ENST00000502850 CHTOPQ9Y3Y2 248 aaKnown RBP8.91□□□□□ -0.98
NUP54-202ENST00000502850 A8MTW9 85 aa8.9□□□□□ -0.99
NUP54-202ENST00000502850 SPINK13Q1W4C9 94 aa8.9□□□□□ -0.99
NUP54-202ENST00000502850 NEXN-AS1Q8NBZ9 246 aa8.9□□□□□ -0.99
NUP54-202ENST00000502850 TMEM141Q96I45 108 aa8.9□□□□□ -0.99
NUP54-202ENST00000502850 JMJD8Q96S16 334 aa8.9□□□□□ -0.99
NUP54-202ENST00000502850 F5H697 171 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 POLR2KP53803 58 aaKnown RBP8.89□□□□□ -0.99
NUP54-202ENST00000502850 TAL2Q16559 108 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 AMTNQ6UX39 209 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 TRPT1Q86TN4 253 aaKnown RBP8.89□□□□□ -0.99
NUP54-202ENST00000502850 GTSCR1Q86UQ5 136 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 Q8N1Y9 231 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 OR4C5Q8NGB2 326 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 DYNLRB2Q8TF09 96 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 SELENOKQ9Y6D0 94 aa8.89□□□□□ -0.99
NUP54-202ENST00000502850 FN1P02751 2386 aaKnown RBP8.89□□□□□ -0.99
NUP54-202ENST00000502850 TRBV27A0A0K0K1C4 114 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 IGKV3-20P01619 116 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 SLURP1P55000 103 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 PIK3CD-AS1Q5SR53 167 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 CHAC1Q9BUX1 264 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 MUC4Q99102 2169 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 TLN2Q9Y4G6 2542 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 HIVEP2P31629 2446 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 SVEP1Q4LDE5 3571 aa8.88□□□□□ -0.99
NUP54-202ENST00000502850 NSD1Q96L73 2696 aaPredicted RBP8.87□□□□□ -0.99
NUP54-202ENST00000502850 TRAV12-2A0A075B6T6 113 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 CBY3A6NI87 242 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 OR11H12B2RN74 326 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 CCL25O15444 150 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 SPRY2O43597 315 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 RHOHQ15669 191 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 ZNF56Q15929 161 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 OR11H1Q8NG94 326 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 OR11H2Q8NH07 326 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 BAALCQ8WXS3 180 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 TIMM17AQ99595 171 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 EDA2RQ9HAV5 297 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 ZNF256Q9Y2P7 627 aaPredicted RBP8.87□□□□□ -0.99
NUP54-202ENST00000502850 VPS13CQ709C8 3753 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 IGKV2D-26A0A0A0MRZ7 120 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 SDHAF1A6NFY7 115 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 SCGB2A2Q13296 93 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 KHDC1LQ5JSQ8 128 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 ZFP2Q6ZN57 461 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 GTF2H5Q6ZYL4 71 aa8.87□□□□□ -0.99
NUP54-202ENST00000502850 TRBV25-1A0A075B6N4 114 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 A0A087WWL8 130 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 TRAV25A0A0B4J276 109 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 C9orf118A6NHY6 69 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 TCTAP57738 103 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 DEFB131AP59861 70 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 HERVK_113P61574 105 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 NSUN5P1Q3KNT7 163 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 FAM74A4Q5TZK3 123 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 Q6ZVH6 145 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 KLHL30-AS1Q8NEE0 82 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 PTH2Q96A98 100 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 MDFICQ9P1T7 246 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 TP53TG1Q9Y2A0 90 aa8.86□□□□□ -0.99
NUP54-202ENST00000502850 INAFM1C9JVW0 142 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 H3BMM0 161 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 ZNF415Q09FC8 603 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 ZNF876PQ49A33 203 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 RAX2Q96IS3 184 aa8.85□□□□□ -0.99
NUP54-202ENST00000502850 CLUHP3Q96NS8 147 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms