RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SMIM2Q9BVW6 85 aa10.22□□□□□ -0.77
GPC1-209ENST00000495100 SEC11AP67812 179 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 Q8N8P6 123 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 TRAV2A0A0B4J234 112 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 FGF6P10767 208 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 DYNLRB2Q8TF09 96 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 DPH3P1Q9H4G8 78 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 ITPR2Q14571 2701 aa10.21□□□□□ -0.77
GPC1-209ENST00000495100 ATRQ13535 2644 aa10.21□□□□□ -0.78
GPC1-209ENST00000495100 TEP1Q99973 2627 aaKnown RBP10.21□□□□□ -0.78
GPC1-209ENST00000495100 DEFB131AP59861 70 aa10.21□□□□□ -0.78
GPC1-209ENST00000495100 SNRPD3P62318 126 aaKnown RBP10.21□□□□□ -0.78
GPC1-209ENST00000495100 PRADC1Q9BSG0 188 aa10.21□□□□□ -0.78
GPC1-209ENST00000495100 SDHAF1A6NFY7 115 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 FBXL19-AS1Q494R0 122 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 DGAT2L7PQ6IED9 249 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 APRG1Q8IVJ8 170 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 SPXQ9BT56 116 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 CRXO43186 299 aaPredicted RBP10.2□□□□□ -0.78
GPC1-209ENST00000495100 Q8N6K4 173 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 GATD1Q8NB37 220 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 PGPEP1Q9NXJ5 209 aa10.2□□□□□ -0.78
GPC1-209ENST00000495100 C9orf118A6NHY6 69 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 C18orf65Q6ZTR6 163 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 UBR5O95071 2799 aaPredicted RBP10.19□□□□□ -0.78
GPC1-209ENST00000495100 CFHR3Q02985 330 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 WFDC2Q14508 124 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 CIDEAO60543 219 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 SLURP1P55000 103 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 ADAMTSL5Q6ZMM2 481 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 ZNF493Q6ZR52 646 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 BOD1L2Q8IYS8 172 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 OR9G4Q8NGQ1 327 aa10.19□□□□□ -0.78
GPC1-209ENST00000495100 PROK1P58294 105 aa10.18□□□□□ -0.78
GPC1-209ENST00000495100 XCL2Q9UBD3 114 aa10.18□□□□□ -0.78
GPC1-209ENST00000495100 TEX48A0A1B0GUV7 120 aa10.18□□□□□ -0.78
GPC1-209ENST00000495100 LINC01549A6NIU2 74 aa10.18□□□□□ -0.78
GPC1-209ENST00000495100 LINC01559Q495D7 138 aa10.18□□□□□ -0.78
GPC1-209ENST00000495100 RBX1P62877 108 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 LINC01587Q99440 93 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 A0A1W2PPM0 123 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 B4DSR2 109 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 H7C1H1 209 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 OVOL1O14753 267 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 HOXA3O43365 443 aaPredicted RBP10.17□□□□□ -0.78
GPC1-209ENST00000495100 C16orf54Q6UWD8 224 aa10.17□□□□□ -0.78
GPC1-209ENST00000495100 IGHV7-4-1A0A0J9YVY3 117 aa10.16□□□□□ -0.78
GPC1-209ENST00000495100 COX6B1P14854 86 aa10.16□□□□□ -0.78
GPC1-209ENST00000495100 LGALS3P17931 250 aaKnown RBP10.16□□□□□ -0.78
GPC1-209ENST00000495100 RASL10AQ92737 203 aa10.16□□□□□ -0.78
GPC1-209ENST00000495100 MRPL52Q86TS9 123 aaKnown RBP10.16□□□□□ -0.78
GPC1-209ENST00000495100 ZFAND2AQ8N6M9 145 aa10.16□□□□□ -0.78
GPC1-209ENST00000495100 PTH2Q96A98 100 aa10.16□□□□□ -0.78
GPC1-209ENST00000495100 ORMDL2Q53FV1 153 aa10.15□□□□□ -0.78
GPC1-209ENST00000495100 Q8N1Y9 231 aa10.15□□□□□ -0.78
GPC1-209ENST00000495100 TCTEX1D4Q5JR98 221 aa10.15□□□□□ -0.78
GPC1-209ENST00000495100 NDUFA4O00483 81 aa10.15□□□□□ -0.79
GPC1-209ENST00000495100 PLEKHB2Q96CS7 222 aa10.15□□□□□ -0.79
GPC1-209ENST00000495100 SMPXQ9UHP9 88 aa10.15□□□□□ -0.79
GPC1-209ENST00000495100 FAM223BA6NKX1 122 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 F8VRH5 84 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 H3BRM9 83 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 HERVK_113P61574 105 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 SRSF2Q01130 221 aaKnown RBP10.14□□□□□ -0.79
GPC1-209ENST00000495100 FAM223AQ8IWN6 122 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 A0A1B0GV72 72 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 SUMO4Q6EEV6 95 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 C10orf105Q8TEF2 133 aa10.14□□□□□ -0.79
GPC1-209ENST00000495100 IGHV4OR15-8A0A075B7B6 117 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 A0A087WW49 117 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 PIFOQ8TCI5 191 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 A0A087WX48 190 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 DAND5Q8N907 189 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 K7EP34 96 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 EBI3Q14213 229 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 CEND1Q8N111 149 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 VCX2Q9H322 139 aa10.13□□□□□ -0.79
GPC1-209ENST00000495100 C11orf86A6NJI1 115 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 A8MZ25 164 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 HOXD3P31249 432 aaPredicted RBP10.12□□□□□ -0.79
GPC1-209ENST00000495100 KRTAP10-9P60411 292 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 C12orf74Q32Q52 190 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 NRACQ8N912 160 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 TMEM190Q8WZ59 177 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 HHLA3Q9XRX5 114 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 TNFRSF18Q9Y5U5 241 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 CD28P10747 220 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 Q5PR19 223 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 C9orf47Q6ZRZ4 202 aa10.12□□□□□ -0.79
GPC1-209ENST00000495100 BAALCQ8WXS3 180 aa10.11□□□□□ -0.79
GPC1-209ENST00000495100 TSSC4Q9Y5U2 329 aaPredicted RBP10.11□□□□□ -0.79
GPC1-209ENST00000495100 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.11□□□□□ -0.79
GPC1-209ENST00000495100 A0A0J9YXV3 536 aa10.11□□□□□ -0.79
GPC1-209ENST00000495100 IGKV2-29A2NJV5 120 aaPredicted RBP10.11□□□□□ -0.79
GPC1-209ENST00000495100 SYT8Q8NBV8 401 aa10.11□□□□□ -0.79
GPC1-209ENST00000495100 USMG5Q96IX5 58 aa10.11□□□□□ -0.79
GPC1-209ENST00000495100 ZNF580Q9UK33 172 aa10.11□□□□□ -0.79
GPC1-209ENST00000495100 MYMXA0A1B0GTQ4 84 aa10.1□□□□□ -0.79
GPC1-209ENST00000495100 PLNP26678 52 aa10.1□□□□□ -0.79
GPC1-209ENST00000495100 GAGE13Q4V321 117 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms