RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 CXCL1P09341 107 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 MIFP14174 115 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 FER1L6-AS1Q8NA97 138 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 TSKUQ8WUA8 353 aa8.68□□□□□ -1.02
UPF3A-210ENST00000493727 A0A087WWC5 75 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 IGHV3-16A0A0C4DH30 117 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 A0A1W2PPQ1 181 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 AZU1P20160 251 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 EMP1P54849 157 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 ZNF493Q6ZR52 646 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 BORCS7Q96B45 105 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 KRTAP4-11Q9BYQ6 195 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 GSN-AS1Q9NRJ2 163 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 IL36BQ9NZH7 164 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 MDFICQ9P1T7 246 aa8.67□□□□□ -1.02
UPF3A-210ENST00000493727 MUC4Q99102 2169 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 IGHV4-28A0A0C4DH34 117 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 ARMS2P0C7Q2 107 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 S100PP25815 95 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 KCNIP4Q6PIL6 250 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 RNASE8Q8TDE3 154 aaKnown RBP8.66□□□□□ -1.02
UPF3A-210ENST00000493727 PGLYRP4Q96LB8 373 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 GFRA4Q9GZZ7 299 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 NAT8BQ9UHF3 227 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 PHLDA3Q9Y5J5 127 aa8.66□□□□□ -1.02
UPF3A-210ENST00000493727 HIGD1CA8MV81 97 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 DEFB4AO15263 64 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 NANOS2P60321 138 aaKnown RBP8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SSTP61278 116 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SPANXN1Q5VSR9 72 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 ATRAIDQ6UW56 229 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 SPXQ9BT56 116 aa8.65□□□□□ -1.02
UPF3A-210ENST00000493727 MUC21A0A0G2JKD1 596 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 MUC21A0A140T8X8 626 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 SMIM27A0A1W2PRY6 76 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 FAM231BA6NCW3 169 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 F2Z2F3 143 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 M0R381 172 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 IGLC6P0CF74 106 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 RNASE3P12724 160 aaKnown RBP8.64□□□□□ -1.03
UPF3A-210ENST00000493727 DNLZQ5SXM8 178 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 LYZL1Q6UWQ5 148 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 Q8NAQ8 132 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 C11orf72Q8NBR9 251 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 GTSF1Q8WW33 167 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 C9orf85Q96MD7 179 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 NOP10Q9NPE3 64 aaKnown RBP8.64□□□□□ -1.03
UPF3A-210ENST00000493727 TMEM242Q9NWH2 141 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 URGCP-MRPS24S4R325 110 aa8.64□□□□□ -1.03
UPF3A-210ENST00000493727 TRGV1A0A0A0MS02 117 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 TEX48A0A1B0GUV7 120 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 M0R2P5 195 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SNAI2O43623 268 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 OR5AL1P0C617 328 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 CTRLP40313 264 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 FAM3BP58499 235 aaPredicted RBP8.63□□□□□ -1.03
UPF3A-210ENST00000493727 CACNG7P62955 275 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 ZFP82Q8N141 532 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 NUP35Q8NFH5 326 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 OR10AG1Q8NH19 301 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 IMMP2LQ96T52 175 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 KRTAP4-2Q9BYR5 136 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SMCO4Q9NRQ5 59 aa8.63□□□□□ -1.03
UPF3A-210ENST00000493727 MRPL16Q9NX20 251 aaKnown RBP8.63□□□□□ -1.03
UPF3A-210ENST00000493727 SPINK4O60575 86 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 DAZ2Q13117 558 aaKnown RBP8.62□□□□□ -1.03
UPF3A-210ENST00000493727 RIGQ13278 110 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 TWIST1Q15672 202 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 ZNF575Q86XF7 245 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 SCRT2Q9NQ03 307 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 PKD1P98161 4303 aa8.62□□□□□ -1.03
UPF3A-210ENST00000493727 A0A1B0GUT8 65 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 PLAC8L1A1L4L8 177 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 LYRM9A8MSI8 78 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 FOXA3P55318 350 aaPredicted RBP8.61□□□□□ -1.03
UPF3A-210ENST00000493727 ZNF876PQ49A33 203 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 MRPL54Q6P161 138 aaKnown RBP8.61□□□□□ -1.03
UPF3A-210ENST00000493727 TMEM88Q6PEY1 159 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 CBLN2Q8IUK8 224 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 BTF3L4Q96K17 158 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 HSPG2P98160 4391 aa8.61□□□□□ -1.03
UPF3A-210ENST00000493727 TRAV10A0A0B4J240 114 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12BA1L429 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 IGLL5B9A064 214 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 SCO1O75880 301 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE7O76087 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12FP0CL80 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12GP0CL81 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12IP0CL82 117 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DEFB130BP0DP73 79 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DEFB130AP0DP74 79 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 FAM222AQ5U5X8 452 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 SMIM15Q7Z3B0 74 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 AP1S3Q96PC3 154 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 DKK2Q9UBU2 259 aa8.6□□□□□ -1.03
UPF3A-210ENST00000493727 TRGV2A0A075B6R0 118 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 TRAV9-1A0A075B6T8 112 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 GAGE12HA6NDE8 117 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 TRGC1P0CF51 173 aa8.59□□□□□ -1.03
UPF3A-210ENST00000493727 SPART-AS1P0CW21 52 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 1016.9 ms