RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	RPL36A	P83881	106 aa	Known RBP	11.35	□□□□□ -0.59
NUP50-218	ENST00000493456	OR11H4	Q8NGC9	324 aa		11.35	□□□□□ -0.59
NUP50-218	ENST00000493456	RPL36AL	Q969Q0	106 aa	Known RBP	11.35	□□□□□ -0.59
NUP50-218	ENST00000493456	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	11.35	□□□□□ -0.59
NUP50-218	ENST00000493456	TMEM262	E9PQX1	116 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	PRSS1	P07477	247 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	GCHFR	P30047	84 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	UBE2D3	P61077	147 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	UBE2D2	P62837	147 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	SUMO1	P63165	101 aa	Known RBP	11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	RPL19	P84098	196 aa	Known RBP	11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	DNLZ	Q5SXM8	178 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	C15orf54	Q8N8G6	183 aa		11.34	□□□□□ -0.59
NUP50-218	ENST00000493456	TRBV7-3	A0A075B6L6	115 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456		B4DEV8	164 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456	PKIA	P61925	76 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456	SFRP2	Q96HF1	295 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456	WFDC1	Q9HC57	220 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456	TMEM167B	Q9NRX6	74 aa		11.33	□□□□□ -0.6
NUP50-218	ENST00000493456		A0A087WWL8	130 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	ARMS2	P0C7Q2	107 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	MIA	Q16674	131 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	HSD17B11	Q8NBQ5	300 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	ENKUR	Q8TC29	256 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	ARL2-SNX15	V9GYD0	113 aa		11.32	□□□□□ -0.6
NUP50-218	ENST00000493456	TRBV6-8	A0A0A6YYG3	113 aa		11.31	□□□□□ -0.6
NUP50-218	ENST00000493456	ANG	P03950	147 aa	Known RBP	11.31	□□□□□ -0.6
NUP50-218	ENST00000493456	MPV17L2	Q567V2	206 aa		11.31	□□□□□ -0.6
NUP50-218	ENST00000493456	RAB24	Q969Q5	203 aa		11.31	□□□□□ -0.6
NUP50-218	ENST00000493456	PHLDA3	Q9Y5J5	127 aa		11.31	□□□□□ -0.6
NUP50-218	ENST00000493456	PANO1	I0J062	215 aa		11.3	□□□□□ -0.6
NUP50-218	ENST00000493456	SDIM1	Q6ZPB5	146 aa		11.3	□□□□□ -0.6
NUP50-218	ENST00000493456	OR10G8	Q8NGN5	311 aa		11.3	□□□□□ -0.6
NUP50-218	ENST00000493456	KRBOX1	C9JBD0	128 aa		11.29	□□□□□ -0.6
NUP50-218	ENST00000493456	CXorf1	O96002	111 aa		11.29	□□□□□ -0.6
NUP50-218	ENST00000493456	CIRBP	Q14011	172 aa	Known RBP	11.29	□□□□□ -0.6
NUP50-218	ENST00000493456	TRAV34	A0A0B4J273	112 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456		A0A1W2PRE2	83 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456	MB	P02144	154 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456	TPT1	P13693	172 aa	Known RBP	11.28	□□□□□ -0.6
NUP50-218	ENST00000493456		Q86TA4	180 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456	ZFP82	Q8N141	532 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456	CLRN3	Q8NCR9	226 aa		11.28	□□□□□ -0.6
NUP50-218	ENST00000493456		M0R036	132 aa		11.27	□□□□□ -0.61
NUP50-218	ENST00000493456		M0R381	172 aa		11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	RNF185	Q96GF1	192 aa		11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	CHCHD5	Q9BSY4	110 aa		11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	PSMG3	Q9BT73	122 aa	Predicted RBP	11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	PRR34	Q9NV39	138 aa		11.27	□□□□□ -0.61
NUP50-218	ENST00000493456	GRIFIN	A4D1Z8	144 aa		11.26	□□□□□ -0.61
NUP50-218	ENST00000493456	PTTG1	O95997	202 aa		11.26	□□□□□ -0.61
NUP50-218	ENST00000493456	CNBP	P62633	177 aa	Known RBP	11.26	□□□□□ -0.61
NUP50-218	ENST00000493456	COX8C	Q7Z4L0	72 aa		11.26	□□□□□ -0.61
NUP50-218	ENST00000493456	INMT-MINDY4	F8WBC2	141 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	SSNA1	O43805	119 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	CRIP1	P50238	77 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	RAB4B	P61018	213 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	SERF2	P84101	59 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	FAM162B	Q5T6X4	162 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	DPH3P1	Q9H4G8	78 aa		11.25	□□□□□ -0.61
NUP50-218	ENST00000493456	PEX7	O00628	323 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	SH2D1A	O60880	128 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	IFNA7	P01567	189 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	TMEM97	Q5BJF2	176 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	KRTAP26-1	Q6PEX3	210 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	NEXN-AS1	Q8NBZ9	246 aa		11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	ACTR3C	Q9C0K3	210 aa	Predicted RBP	11.24	□□□□□ -0.61
NUP50-218	ENST00000493456	LINC01559	Q495D7	138 aa		11.23	□□□□□ -0.61
NUP50-218	ENST00000493456	LINC00299	Q6ZSB3	139 aa		11.23	□□□□□ -0.61
NUP50-218	ENST00000493456	HIST1H2BA	Q96A08	127 aa		11.23	□□□□□ -0.61
NUP50-218	ENST00000493456	ZFP30	Q9Y2G7	519 aa		11.23	□□□□□ -0.61
NUP50-218	ENST00000493456	IGHV3-64	A0A075B6Q5	118 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	ATP6V0C	P27449	155 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	ZNF56	Q15929	161 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	PRR27	Q6MZM9	219 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	CLPSL2	Q6UWE3	100 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	LINC00269	Q8N2A0	174 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	S100Z	Q8WXG8	99 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	NKX6-2	Q9C056	277 aa	Predicted RBP	11.22	□□□□□ -0.61
NUP50-218	ENST00000493456	TNFSF18	Q9UNG2	199 aa		11.22	□□□□□ -0.61
NUP50-218	ENST00000493456		A0A087WYN8	130 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	RBX1	P62877	108 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	ZNF674	Q2M3X9	581 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	SPACA4	Q8TDM5	124 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	DPH3	Q96FX2	82 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	MARVELD1	Q9BSK0	173 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	NDUFA13	Q9P0J0	144 aa		11.21	□□□□□ -0.61
NUP50-218	ENST00000493456	TMSB15B	A0A087X1C1	80 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	hDV102S1	A0JD36	115 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	C7orf33	Q8WU49	177 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	FMC1	Q96HJ9	113 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	LINC01600	Q96MT4	127 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	AP5S1	Q9NUS5	200 aa		11.2	□□□□□ -0.62
NUP50-218	ENST00000493456	UPK1B	O75841	260 aa		11.19	□□□□□ -0.62
NUP50-218	ENST00000493456	UBE2G2	P60604	165 aa		11.19	□□□□□ -0.62
NUP50-218	ENST00000493456	NTM-AS1	Q6ZSK4	140 aa		11.19	□□□□□ -0.62
NUP50-218	ENST00000493456	VAX2	Q9UIW0	290 aa		11.19	□□□□□ -0.62
NUP50-218	ENST00000493456	TRBV25-1	A0A075B6N4	114 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 42 ms