RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PCP2Q8IVA1 136 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 U3KQK5 164 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 IGKV3D-20A0A0C4DH25 116 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 RBX1P62877 108 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 PRIMA1Q86XR5 153 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 OR9G4Q8NGQ1 327 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 RNF185Q96GF1 192 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 CITED1Q99966 193 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 AGRNO00468 2067 aa9.07□□□□□ -0.96
HDAC6-230ENST00000488543 TRAV26-2A0A0B4J265 109 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 A0A1B0GW15 77 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 NMUP48645 174 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 FHL3Q13643 280 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 NOTCH3Q9UM47 2321 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 HBDP02042 147 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 ZNF688P0C7X2 276 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 APRG1Q8IVJ8 170 aa9.06□□□□□ -0.96
HDAC6-230ENST00000488543 K7EP13 123 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 IFI27L1Q96BM0 104 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 PEMTQ9UBM1 199 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 STAB1Q9NY15 2570 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 K7EMI3 77 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 KRTAP24-1Q3LI83 254 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 PSMG4Q5JS54 123 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 C12orf54Q6X4T0 127 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 RAB37Q96AX2 223 aa9.05□□□□□ -0.96
HDAC6-230ENST00000488543 TRBV7-9A0A0J9YWB2 115 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 C7orf71A4D174 169 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 KIR3DS1Q14943 382 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 TMEM97Q5BJF2 176 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 IGKV2D-26A0A0A0MRZ7 120 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 LEPP41159 167 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 COL6A5A8TX70 2615 aa9.04□□□□□ -0.96
HDAC6-230ENST00000488543 A0A0J9YX75 114 aa9.03□□□□□ -0.96
HDAC6-230ENST00000488543 SNRPD3P62318 126 aaKnown RBP9.03□□□□□ -0.96
HDAC6-230ENST00000488543 CNFNQ9BYD5 112 aa9.03□□□□□ -0.96
HDAC6-230ENST00000488543 VCX2Q9H322 139 aa9.03□□□□□ -0.96
HDAC6-230ENST00000488543 LGALS9BQ3B8N2 356 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 LGALS9CQ6DKI2 356 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 TMEM61Q8N0U2 210 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 SPATA3Q8NHX4 192 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 KLLNB2CW77 178 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 DEFB114Q30KQ6 69 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 NDUFA11Q86Y39 141 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 MAP1LC3AQ9H492 121 aa9.02□□□□□ -0.97
HDAC6-230ENST00000488543 TRAV2A0A0B4J234 112 aa9.01□□□□□ -0.97
HDAC6-230ENST00000488543 TRAV21A0A0B4J279 112 aa9.01□□□□□ -0.97
HDAC6-230ENST00000488543 RNASE4P34096 147 aaKnown RBP9.01□□□□□ -0.97
HDAC6-230ENST00000488543 DEFB104AQ8WTQ1 72 aa9.01□□□□□ -0.97
HDAC6-230ENST00000488543 TMEM158Q8WZ71 300 aa9.01□□□□□ -0.97
HDAC6-230ENST00000488543 ODF3Q96PU9 254 aa9.01□□□□□ -0.97
HDAC6-230ENST00000488543 H3BUT2 72 aa9□□□□□ -0.97
HDAC6-230ENST00000488543 CD300EQ496F6 205 aaPredicted RBP9□□□□□ -0.97
HDAC6-230ENST00000488543 BOD1L2Q8IYS8 172 aa9□□□□□ -0.97
HDAC6-230ENST00000488543 DYNLRB2Q8TF09 96 aa9□□□□□ -0.97
HDAC6-230ENST00000488543 CST9LQ9H4G1 147 aa9□□□□□ -0.97
HDAC6-230ENST00000488543 MUC4Q99102 2169 aa9□□□□□ -0.97
HDAC6-230ENST00000488543 H3BVH4 76 aa8.99□□□□□ -0.97
HDAC6-230ENST00000488543 PRSS1P07477 247 aa8.99□□□□□ -0.97
HDAC6-230ENST00000488543 GTSCR1Q86UQ5 136 aa8.99□□□□□ -0.97
HDAC6-230ENST00000488543 ANXA2RQ3ZCQ2 193 aa8.99□□□□□ -0.97
HDAC6-230ENST00000488543 FOXI2Q6ZQN5 318 aa8.99□□□□□ -0.97
HDAC6-230ENST00000488543 AMTNQ6UX39 209 aa8.98□□□□□ -0.97
HDAC6-230ENST00000488543 ZMAT4Q9H898 229 aa8.98□□□□□ -0.97
HDAC6-230ENST00000488543 K7ERJ3 54 aa8.98□□□□□ -0.97
HDAC6-230ENST00000488543 SAP30O75446 220 aa8.98□□□□□ -0.97
HDAC6-230ENST00000488543 IGKV3-20P01619 116 aa8.98□□□□□ -0.97
HDAC6-230ENST00000488543 A8MTW9 85 aa8.97□□□□□ -0.97
HDAC6-230ENST00000488543 DUSP14O95147 198 aaKnown RBP8.97□□□□□ -0.97
HDAC6-230ENST00000488543 DEFB131AP59861 70 aa8.97□□□□□ -0.97
HDAC6-230ENST00000488543 GAGE12BA1L429 117 aa8.97□□□□□ -0.97
HDAC6-230ENST00000488543 KNCNA6PVL3 124 aa8.97□□□□□ -0.97
HDAC6-230ENST00000488543 FCER1GP30273 86 aa8.97□□□□□ -0.97
HDAC6-230ENST00000488543 ZNF256Q9Y2P7 627 aaPredicted RBP8.97□□□□□ -0.97
HDAC6-230ENST00000488543 IGHV4-4A0A075B6R2 117 aa8.96□□□□□ -0.97
HDAC6-230ENST00000488543 OCIAD2Q56VL3 154 aa8.96□□□□□ -0.97
HDAC6-230ENST00000488543 OR2K2Q8NGT1 345 aa8.96□□□□□ -0.97
HDAC6-230ENST00000488543 MAP6D1Q9H9H5 199 aa8.96□□□□□ -0.97
HDAC6-230ENST00000488543 PKD1L1Q8TDX9 2849 aa8.96□□□□□ -0.97
HDAC6-230ENST00000488543 TRAV25A0A0B4J276 109 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 GNRH2O43555 120 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 GCSHP23434 173 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 FXYD2P54710 66 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 LINC00482Q8N8I6 264 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 HHLA3Q9XRX5 114 aa8.96□□□□□ -0.98
HDAC6-230ENST00000488543 IGLV2-18A0A075B6J9 118 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 TRAV12-3A0A0B4J271 114 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1BA6NDE4 496 aaKnown RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1EA6NEQ0 496 aaKnown RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 GAGE10A6NGK3 116 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 M0R381 172 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 RBMY1DP0C7P1 496 aaKnown RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 HLA-DRB4P13762 266 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 SEC11AP67812 179 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 SPANXN1Q5VSR9 72 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 NRACQ8N912 160 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 SPAG8Q99932 426 aaPredicted RBP8.95□□□□□ -0.98
HDAC6-230ENST00000488543 HLA-DRB4X5D2U9 266 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 TRAV12-2A0A075B6T6 113 aa8.95□□□□□ -0.98
HDAC6-230ENST00000488543 H3BMM0 161 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms