RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 RHODO00212 210 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 CRYGDP07320 174 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 SSTP61278 116 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 CACNG7P62955 275 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 ADIRFQ15847 76 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 CT83Q5H943 113 aa8.31□□□□□ -1.08
VPS13D-204ENST00000469054 TENM2Q9NT68 2774 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 A0A087WWL8 130 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 TRBV6-4A0A1B0GX49 114 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 A8MWL6 223 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 MRPL23Q16540 153 aaKnown RBP8.3□□□□□ -1.08
VPS13D-204ENST00000469054 FAM74A4Q5TZK3 123 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 UQCC3Q6UW78 93 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 LYZL1Q6UWQ5 148 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 C15orf54Q8N8G6 183 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 SLC25A29Q8N8R3 303 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 GTSF1Q8WW33 167 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 ICOSQ9Y6W8 199 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 VPS13DQ5THJ4 4388 aa8.3□□□□□ -1.08
VPS13D-204ENST00000469054 K7EQD1 137 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 GYPEP15421 78 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 CTRLP40313 264 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 CCL18P55774 89 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 RHOHQ15669 191 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 RNF212Q495C1 297 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 WDR73Q6P4I2 378 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 Q6ZSN1 163 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 UBE2DNLQ8IWF7 75 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 LYSTQ99698 3801 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 PRADC1Q9BSG0 188 aa8.29□□□□□ -1.08
VPS13D-204ENST00000469054 LOC100131303A0A0U1RQF7 123 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 SRIP30626 198 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 FOXA3P55318 350 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-204ENST00000469054 ESRGQ1W209 222 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 NEGR1Q7Z3B1 354 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 C14orf178Q8N769 122 aaPredicted RBP8.28□□□□□ -1.08
VPS13D-204ENST00000469054 OR10G8Q8NGN5 311 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 TSKUQ8WUA8 353 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 CNFNQ9BYD5 112 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 MSRB1Q9NZV6 116 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 V9GYV3 84 aa8.28□□□□□ -1.08
VPS13D-204ENST00000469054 LINC00862A6NCI5 91 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 FAM231BA6NCW3 169 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 SMIM17P0DL12 118 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 NTF3P20783 257 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 FAM3BP58499 235 aaPredicted RBP8.27□□□□□ -1.09
VPS13D-204ENST00000469054 COMMD7Q86VX2 200 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 AP1S3Q96PC3 154 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 GFRA4Q9GZZ7 299 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 LINC00588Q9Y4M8 146 aa8.27□□□□□ -1.09
VPS13D-204ENST00000469054 TRGC1P0CF51 173 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 RAB4BP61018 213 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 PNRC1Q12796 327 aaPredicted RBP8.26□□□□□ -1.09
VPS13D-204ENST00000469054 TWIST1Q15672 202 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 SH2D6Q7Z4S9 175 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 PGLYRP4Q96LB8 373 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 KIF25-AS1Q9Y6Z4 181 aa8.26□□□□□ -1.09
VPS13D-204ENST00000469054 TMEM218A2RU14 115 aa8.25□□□□□ -1.09
VPS13D-204ENST00000469054 HIGD1CA8MV81 97 aa8.25□□□□□ -1.09
VPS13D-204ENST00000469054 EVI2AP22794 236 aa8.25□□□□□ -1.09
VPS13D-204ENST00000469054 LINC00315P59091 139 aa8.25□□□□□ -1.09
VPS13D-204ENST00000469054 LYPD5Q6UWN5 251 aa8.25□□□□□ -1.09
VPS13D-204ENST00000469054 HYDINQ4G0P3 5121 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 RYR2Q92736 4967 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 KMT2AQ03164 3969 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 TRBV10-1A0A0K0K1A3 114 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 GAGE12JA6NER3 117 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 F5H697 171 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 GAGE1Q13065 139 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 GAGE4Q13068 117 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 GAGE5Q13069 117 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 ZNF56Q15929 161 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 GAGE13Q4V321 117 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 BORCS7Q96B45 105 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 UPK3BQ9BT76 320 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 Q9UF83 564 aa8.24□□□□□ -1.09
VPS13D-204ENST00000469054 MRPS16Q9Y3D3 137 aaKnown RBP8.24□□□□□ -1.09
VPS13D-204ENST00000469054 RYR3Q15413 4870 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 A0A1B0GUT8 65 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 F8W036 122 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 ADCYAP1P18509 176 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 NUP35Q8NFH5 326 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 ZNRF2Q8NHG8 242 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 DPH3P1Q9H4G8 78 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 NAT8BQ9UHF3 227 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 NACAE9PAV3 2078 aa8.23□□□□□ -1.09
VPS13D-204ENST00000469054 SMIM27A0A1W2PRY6 76 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 PPP1R2P9O14990 202 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 MGPP08493 103 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 LINC00694P0DN24 101 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 SMIM15Q7Z3B0 74 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 ATP6V0E2Q8NHE4 81 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 ANAPC16Q96DE5 110 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 SEC11CQ9BY50 192 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 Q9H8V8 135 aa8.22□□□□□ -1.09
VPS13D-204ENST00000469054 IGLV2-18A0A075B6J9 118 aa8.21□□□□□ -1.1
VPS13D-204ENST00000469054 TIRAPP58753 221 aa8.21□□□□□ -1.1
VPS13D-204ENST00000469054 RPL36AP83881 106 aaKnown RBP8.21□□□□□ -1.1
VPS13D-204ENST00000469054 TNP2Q05952 138 aa8.21□□□□□ -1.1
VPS13D-204ENST00000469054 RPL36ALQ969Q0 106 aaKnown RBP8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms