RNA–Protein interactions for RNA: ENST00000441915.5

SEMA3B-207, Transcript of semaphorin 3B, humanhuman

TSL 1 (best)

Gene SEMA3B, Length 2,710 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-207ENST00000441915 TRAV12-3A0A0B4J271 114 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 A6NJY4 79 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 ZNF815PA8K554 130 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 SCGB1D4Q6XE38 83 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 JPT2Q9H910 190 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 SPG11Q96JI7 2443 aa12.35□□□□□ -0.43
SEMA3B-207ENST00000441915 MAP1AP78559 2803 aaPredicted RBP12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 A0A1B0GWB2 263 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 F5H697 171 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 POLR2KP53803 58 aaKnown RBP12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 SUMO4Q6EEV6 95 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 H3BMG7 143 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 VCYO14598 125 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 CRYGDP07320 174 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 RRN3P1Q2M238 152 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 PAPPA-AS1Q5QFB9 102 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 ZFP2Q6ZN57 461 aa12.34□□□□□ -0.43
SEMA3B-207ENST00000441915 A0A087WWL8 130 aa12.33□□□□□ -0.44
SEMA3B-207ENST00000441915 HOXA3O43365 443 aaPredicted RBP12.33□□□□□ -0.44
SEMA3B-207ENST00000441915 TSPAN13O95857 204 aa12.33□□□□□ -0.44
SEMA3B-207ENST00000441915 ZNF418Q8TF45 676 aaPredicted RBP12.33□□□□□ -0.44
SEMA3B-207ENST00000441915 INSL3P51460 131 aa12.32□□□□□ -0.44
SEMA3B-207ENST00000441915 TMEM95Q3KNT9 176 aa12.32□□□□□ -0.44
SEMA3B-207ENST00000441915 IGIPA6NJ69 53 aa12.32□□□□□ -0.44
SEMA3B-207ENST00000441915 TSHBP01222 138 aa12.32□□□□□ -0.44
SEMA3B-207ENST00000441915 GAGE13Q4V321 117 aa12.32□□□□□ -0.44
SEMA3B-207ENST00000441915 SDHAF1A6NFY7 115 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 AVPP01185 164 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 COX6B1P14854 86 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 PSMB8P28062 276 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 HERVK_113P61574 105 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 PMVKQ15126 192 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 DEFB104AQ8WTQ1 72 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 C11orf86A6NJI1 115 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 B4DSR2 109 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 ZNF688P0C7X2 276 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 SRSF9Q13242 221 aaKnown RBP eCLIP12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 TMEM141Q96I45 108 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 ZNF580Q9UK33 172 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 IGLV4-69A0A075B6H9 119 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 FAM74A4Q5TZK3 123 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 AMTNQ6UX39 209 aa12.31□□□□□ -0.44
SEMA3B-207ENST00000441915 CSPG4Q6UVK1 2322 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 SNRPD3P62318 126 aaKnown RBP12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 RPL39P62891 51 aaKnown RBP12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 TIMM17AQ99595 171 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 EMP1P54849 157 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 KLHL30-AS1Q8NEE0 82 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 ODF3Q96PU9 254 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 PRO0461Q9UI25 63 aa12.3□□□□□ -0.44
SEMA3B-207ENST00000441915 TRBV27A0A0K0K1C4 114 aa12.29□□□□□ -0.44
SEMA3B-207ENST00000441915 LGALS9O00182 355 aa12.29□□□□□ -0.44
SEMA3B-207ENST00000441915 PLEKHB2Q96CS7 222 aa12.29□□□□□ -0.44
SEMA3B-207ENST00000441915 SPINK8P0C7L1 97 aa12.29□□□□□ -0.44
SEMA3B-207ENST00000441915 SYT8Q8NBV8 401 aa12.29□□□□□ -0.44
SEMA3B-207ENST00000441915 TRAV12-2A0A075B6T6 113 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 TRBV6-5A0A0K0K1A5 114 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 IGKV3-20P01619 116 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 MORN3Q6PF18 240 aaPredicted RBP12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 C9orf85Q96MD7 179 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 PGPEP1Q9NXJ5 209 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 CELSR2Q9HCU4 2923 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 IGHV3-16A0A0C4DH30 117 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 A0A0J9YX75 114 aa12.28□□□□□ -0.44
SEMA3B-207ENST00000441915 GATA3P23771 443 aa12.27□□□□□ -0.44
SEMA3B-207ENST00000441915 ZNF56Q15929 161 aa12.27□□□□□ -0.44
SEMA3B-207ENST00000441915 MDFICQ9P1T7 246 aa12.27□□□□□ -0.44
SEMA3B-207ENST00000441915 IGHV4-59P01825 116 aa12.27□□□□□ -0.45
SEMA3B-207ENST00000441915 CDIP1Q9H305 208 aa12.27□□□□□ -0.45
SEMA3B-207ENST00000441915 ZNF256Q9Y2P7 627 aaPredicted RBP12.27□□□□□ -0.45
SEMA3B-207ENST00000441915 APOMO95445 188 aa12.26□□□□□ -0.45
SEMA3B-207ENST00000441915 TMEM170BQ5T4T1 132 aa12.26□□□□□ -0.45
SEMA3B-207ENST00000441915 C10orf99Q6UWK7 81 aa12.26□□□□□ -0.45
SEMA3B-207ENST00000441915 Q8N1Y9 231 aa12.26□□□□□ -0.45
SEMA3B-207ENST00000441915 FOXI1Q12951 378 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 RNF183Q96D59 192 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 ERG28Q9UKR5 140 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 CRYBG3Q68DQ2 2970 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 IGHV1OR15-1A0A075B7D0 117 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 UBE2D1P51668 147 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 DEFB112Q30KQ8 113 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 ZNF876PQ49A33 203 aa12.25□□□□□ -0.45
SEMA3B-207ENST00000441915 A0A0J9YY99 117 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 TMEM89A2RUT3 159 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 K7EQG2 157 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 M0QY20 66 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 SPINK13Q1W4C9 94 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 MT-ATP8P03928 68 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 SS18L2Q9UHA2 77 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 ZNRF2Q8NHG8 242 aa12.24□□□□□ -0.45
SEMA3B-207ENST00000441915 TRPT1Q86TN4 253 aaKnown RBP12.23□□□□□ -0.45
SEMA3B-207ENST00000441915 SYNJ2BPP57105 145 aa12.23□□□□□ -0.45
SEMA3B-207ENST00000441915 C1QTNF4Q9BXJ3 329 aa12.23□□□□□ -0.45
SEMA3B-207ENST00000441915 DSCR9P59020 149 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 RHOHQ15669 191 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 NSUN5P1Q3KNT7 163 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 ATP6V0E2Q8NHE4 81 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 PKD1L2Q7Z442 2459 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 Q6ZUT4 128 aa12.22□□□□□ -0.45
SEMA3B-207ENST00000441915 DLX4Q92988 240 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 120.8 ms