RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 AP1S3Q96PC3 154 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 SSBP4Q9BWG4 385 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-208ENST00000437607 CNFNQ9BYD5 112 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 SCRT2Q9NQ03 307 aa8.66□□□□□ -1.02
PTPRF-208ENST00000437607 TRBV24-1A0A075B6N3 115 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 IGHV4-28A0A0C4DH34 117 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 M0R2P5 195 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 NXPH4O95158 308 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 PRM2P04554 102 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 TRGC1P0CF51 173 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 AZU1P20160 251 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 TCTAP57738 103 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 SSTP61278 116 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 TWIST1Q15672 202 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 SMIM15Q7Z3B0 74 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 FAM210BQ96KR6 192 aa8.65□□□□□ -1.02
PTPRF-208ENST00000437607 A0A1B0GXF2 115 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 IGLL5B9A064 214 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 CAMPP49913 170 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 EMP1P54849 157 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 RAB4BP61018 213 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 COX19Q49B96 90 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 WDR73Q6P4I2 378 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 RASL11AQ6T310 242 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 ZNF575Q86XF7 245 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 YPEL4Q96NS1 127 aa8.64□□□□□ -1.03
PTPRF-208ENST00000437607 MRPL16Q9NX20 251 aaKnown RBP8.64□□□□□ -1.03
PTPRF-208ENST00000437607 NACAE9PAV3 2078 aa8.63□□□□□ -1.03
PTPRF-208ENST00000437607 TRGV1A0A0A0MS02 117 aa8.63□□□□□ -1.03
PTPRF-208ENST00000437607 DAZ2Q13117 558 aaKnown RBP8.63□□□□□ -1.03
PTPRF-208ENST00000437607 ZNF876PQ49A33 203 aa8.63□□□□□ -1.03
PTPRF-208ENST00000437607 NDUFAF3Q9BU61 184 aa8.63□□□□□ -1.03
PTPRF-208ENST00000437607 NOP10Q9NPE3 64 aaKnown RBP8.63□□□□□ -1.03
PTPRF-208ENST00000437607 IGHV4-4A0A075B6R2 117 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 TEX48A0A1B0GUV7 120 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 A0A1B0GVY2 172 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 PLAC8L1A1L4L8 177 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 HLA-DQA1P01909 254 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 MT-ND6P03923 174 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 SMIM17P0DL12 118 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 NTF3P20783 257 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 PIK3CD-AS1Q5SR53 167 aa8.62□□□□□ -1.03
PTPRF-208ENST00000437607 LYRM9A8MSI8 78 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 RAB5AP20339 215 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 LGALS9BQ3B8N2 356 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 DMRTA1Q5VZB9 504 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 Q6ZTC4 211 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 PTH2Q96A98 100 aa8.61□□□□□ -1.03
PTPRF-208ENST00000437607 TRGV2A0A075B6R0 118 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 COLCA2A8K830 154 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 A8MWV9 139 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 RHODO00212 210 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 MGPP08493 103 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 RPS10P46783 165 aaKnown RBP8.6□□□□□ -1.03
PTPRF-208ENST00000437607 FAM74A4Q5TZK3 123 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 Q6ZTI0 123 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 FRZBQ92765 325 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 DPH3P1Q9H4G8 78 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 MSRB1Q9NZV6 116 aa8.6□□□□□ -1.03
PTPRF-208ENST00000437607 LRP1BQ9NZR2 4599 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GAGE12BA1L429 117 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GAGE7O76087 117 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GAGE12FP0CL80 117 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GAGE12GP0CL81 117 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GAGE12IP0CL82 117 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 FAM222AQ5U5X8 452 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 TMEM136Q6ZRR5 245 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GATD1Q8NB37 220 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 RASL10AQ92737 203 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 GNB1LQ9BYB4 327 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 TMEM191AQ9H0A3 160 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 CELA1Q9UNI1 258 aa8.59□□□□□ -1.03
PTPRF-208ENST00000437607 A0A087WWL8 130 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 TRAV10A0A0B4J240 114 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 TRAV4A0A0B4J268 109 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 EVI2AP22794 236 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 DAD1P61803 113 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 ZNF56Q15929 161 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 LINC00336Q6ZUF6 198 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 C14orf178Q8N769 122 aaPredicted RBP8.58□□□□□ -1.04
PTPRF-208ENST00000437607 MRPL18Q9H0U6 180 aaKnown RBP8.58□□□□□ -1.04
PTPRF-208ENST00000437607 TRAPPC1Q9Y5R8 145 aa8.58□□□□□ -1.04
PTPRF-208ENST00000437607 RTL8CO15255 209 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 APCSP02743 223 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 SPART-AS1P0CW21 52 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 DEFB130BP0DP73 79 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 DEFB130AP0DP74 79 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 C12orf74Q32Q52 190 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 AMN1Q8IY45 258 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 OR4C5Q8NGB2 326 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 JPT2Q9H910 190 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 DKK2Q9UBU2 259 aa8.57□□□□□ -1.04
PTPRF-208ENST00000437607 APOBP04114 4563 aaKnown RBP8.56□□□□□ -1.04
PTPRF-208ENST00000437607 RS1O15537 224 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 FABP9Q0Z7S8 132 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 SLAQ13239 276 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 CFAP126Q5VTH2 177 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 FAM104BQ5XKR9 115 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 LINC00612Q8N6U2 182 aa8.56□□□□□ -1.04
PTPRF-208ENST00000437607 F5H697 171 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms